BAC Information

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BAC

Clone NameMSMg01-218L01
Chromosome1 (Build37)
Map Location 12,796,199 - 12,796,475
singlet/doubletsinglet
Overlap geneSulf1
Upstream geneA830018L16Rik, LOC665262, LOC100039709, LOC621353, LOC100039733
Downstream geneSlco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218L01.T7 (MSMg01no218_l01.b1)MSMg01-218L01.TJ (MSMg01no218_l01.g1)
ACCAG397771AG397772
length1,044753
length of high quality
(start - end)
---278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no218_l01.b1 PHD_FILE: MSMg01no218_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:47 2005CHROMAT_FILE: MSMg01no218_l01.g1 PHD_FILE: MSMg01no218_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATCCCCCCCCCNTTAACCTNCCCNTTACACAAAACAATGACATATAC
AACCACATACACACCCGCCACAAAAACAACAAGCCAACAAACCACAAACA
CACATACATATATAAACTCCACTCCCAACCCACACCCCCACCAATAACCT
ACCCCAAAACCCAAAGACCATAACCCCCATAACCACTACCAACCAACCAC
ACCACCCAAACACACACCAACACACCACGAAACACAAAAACAAACCCGCA
TCTAACACAAAAGCTAACCAGACATACTAATATAACCAACTCCACCCCAC
CCACAAAATGCCAACCTATCCATCATTATACATCCCACTCCCCCTTCTTT
NNNCCAAGAAGAAAGCGAAAACCCAAACACCCCACCACCTCCCACAAAAA
CCCCCCNCCACCCCCACTTCCCCTNNNNNNNNNNNNNNNNNNNNNTTTCT
ACCTAGANNNNAACAGAAAAGAAGANATAAAAAACCCCCCCNCCCCCCCA
ACAAGGAAAAAGCACCACCAGGGGTACGCCACAAACAAAAAAAACGAGAG
GACCCAGCAACACGCGNTNNNNGCCGATCCCTACTTACTTTTTTGGCGGG
GCGCGGACTTAAATTAAACGGTACCTTCCAACCTTAAATAAGGGGGGTTG
AGCCAAGCGCAATCACCTGTAACGCCGTAAAACTTTTCCTTTAACTCTTG
ACCTTTTATTTATTTCATCGGCAAAGCCCAAGNGTGGNAACACTTTCTTC
GCTTGTAGATTTCTCGCCAACCAACCCTGTTTTTCTACAACTTCATTCCC
TCTTTTCAAAACAGGGGGAAAGGATAAAAAATATCCTCCCTCCNTCTNTC
CCNTCTATTTATAAAAAAACACACTCCTTGGAGGGGAACACCCTCTCATT
TTNTGTTTGGGGGGCNTTACTCCCCCACGCCAAACATTTTTTTTGCGGCC
CNCGGGGCGCGAGGGACGCGGAGGACCCCGGGGGGTATCTGAGGGCTTGA
GCGGCACTCCGAAAAAAAAGGGCCCACCCCCTACCACACCACAC
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTCAGAAGGTTAGAAAAGA
CCCAGACTTACACCTCATCTCTCTGCAAGTCCACTGTGCCCTAATCAGGC
CAGACACAAAGACACTTGCACGCCAGACACAGTAACCTCGTCCCCTTTCC
CTTTCTAACAAACACCTGGACCTGTTGATACAGGCGCTAGACCCAGCTGC
TTTTTGGCACTTCCAGGAAAATGAGATGGACATGCCCAGAAGGAAAGAGT
ATTTTAGAAAAAATTACCACGCTGAATTTAAAGCTATTCCTCCCTTTGCT
TTAACAATCTTTGTTTGGTTCCCTTNNTCAAGAACCCAAGNAAGTAACCA
TAAGAACATATTTGTGATTCGCCGCGAAAAAAAAAAAAAACTCACCGTGC
TCCCCTGGCTGGCTGCAACTCACTACTGAGCCCCAGCTGGTTCAAAAGCT
CTACTCATCTGCCGCAGCCTCCCCAGGGCTGGCCTTTTAAAGACACGGTA
CTGTGTCCGGCTTACTTAGTGTCAGTTTAACAATCCTAGGATGGCACCTA
TTTGTTTGAACACATGGGCTTGCTTCCTTAAGGCTTGATTTGGAAAATCC
CAACAAACGAACGCCCCAATACTGCGTATTAACCACTTATCGGGCTTCCG
GGTCCATTGCCCTCTGTTCCCAAAAAAAATATGGCTCCCTTCAACATGGT
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_l01.g1 MSMg01no218_l01.g1 CHROMAT_FILE:
MSMg01no218_l01.g1 PHD_FILE: MSMg01no218_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:47 2005
         (278 letters)



>mm_chr1_12795999_12796676
          Length = 678

 Score =  528 bits (273), Expect = e-154
 Identities = 276/277 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttttcagaaggttagaaaagacccagacttacacctcatctctctgcaagtccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tttgttttcagaaggttagaaaagacccagacttacacctcatctctctgcaagtccact 418

                                                                       
Query: 61  gtgccctaatcaggccagacacaaagacacttgcacgccagacacagtaacctcgtcccc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtgccgtaatcaggccagacacaaagacacttgcacgccagacacagtaacctcgtcccc 358

                                                                       
Query: 121 tttccctttctaacaaacacctggacctgttgatacaggcgctagacccagctgcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tttccctttctaacaaacacctggacctgttgatacaggcgctagacccagctgcttttt 298

                                                                       
Query: 181 ggcacttccaggaaaatgagatggacatgcccagaaggaaagagtattttagaaaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ggcacttccaggaaaatgagatggacatgcccagaaggaaagagtattttagaaaaaatt 238

                                                
Query: 241 accacgctgaatttaaagctattcctccctttgcttt 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 accacgctgaatttaaagctattcctccctttgcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)