BAC Information

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BAC

Clone NameMSMg01-218O19
Chromosome1 (Build37)
Map Location 174,364,041 - 174,524,926
singlet/doubletdoublet
Overlap geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8
Upstream geneF11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Downstream geneFcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218O19.T7 (MSMg01no218_o19.b1)MSMg01-218O19.TJ (MSMg01no218_o19.g1)
ACCAG397913AG397914
length779757
length of high quality
(start - end)
211 (45 - 255)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no218_o19.b1 PHD_FILE: MSMg01no218_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:04 2005CHROMAT_FILE: MSMg01no218_o19.g1 PHD_FILE: MSMg01no218_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,364,041 - 174,364,247)(174,524,639 - 174,524,926)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCGACAGAAGTCATAGCTAAAAATAAGCAGAGGAAATATAAAAGT
CCCCAGAGAAAAAGACTCAGTGAGGAGGACCCTGAGTGTGCTACTCCGGT
TGGGGTGGGGATTGGGTAGGCGTTCTGAGTTATAGAGAACAATAATCAAA
GAAGGATGACTGACAGAGCTAGGCATTGAAGATAGTGGGGGGTGGGAGTG
GAGCTTGXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCTTTCTCCCTCTC
TAAACTCTGTCTTGCTACATGCATTTTTTTTTCCTCTCACGCTTCGCTCT
AGAGAAGGATGGTTTTTAGTAACTTCTAAACAGACCCCCTGATTGTTTTT
TTGTGTTGGTTTGGTCCCCCCCCCTTTAAAAAAAAAAAAAACTCTGGGGG
GGGGGTGTTGGTCTCCCTCCACCCTTATTACCTCTTTATACTTACCCCTT
TTCTCTTTTTTATTCCTTTCACACTATCTCTCTCTTTCCCCTATCTTTCC
TTTTTGTTATTTTTCTCTCATCTAACTTTCCCGCTCTCTTCGTTCTTTCT
TTTCAGATGCTTCTGACCTTTTTTATCTACATCTTATTCTACTGTTTTAT
TCCTGCCCGTTTAAAAATAGTATTCTTTACCTCTTTCCTCACTTTATTTC
TCTCTACTAACCCTCTCCCCCTTGCCTTTATATTTCTTTTTCCTTTATTT
TTTCTCTCTCTCTCATTTATACATATAAG
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGTCTGCATTGGGGACATTGGCT
GCAGCAGCCTGGAATTGCCCCTTAATGGAAGGAGAAACAAACACACAATT
GGGAGCCCTGTGGCTGCCCTCTGCTGGCCTTCTCTGGTACTCAAGAATTT
ATGTGCTGGCTACACTCAGGCTAGTCCATTCACAGGAGACCTACATCTTA
AAAGATGGAGATTGGGAGTGCAGTTCAATTGGTAGAGTACTTGCTAGGCA
TGAGAAAAACCCTGGAAGCATCTTTCATACCCAGTGGGTGGTGAGTACCT
GAGGTCTCAGCATGTTATTGCGTCCAGACCGGAGCACCAGAAATTCAACG
TCATCTTCAGCTACAGAACACCCTTCCAGAACAAAAAAAACTGTATGGGA
TCCTGTATTGAGAATTTTGGTCTCTTAAAAAAAAAAAAAAAAAAAGTCAT
GTTATGTGAATATGTTTTTTGTTTAATCCCAGGTTCAAAATAAGAGGTTG
CTTCACAGTGATTGTGATTTGCCTCCTGTTCTAGCAAGGGCATGATTTTT
GCCTGTTGTACATCATTTAATTTGGGGGACTCTGGAGATGGTATCAATGG
CAGAGCCCAGAGCGGGATAGGGGTACTACATAAGAGGAGGCTGCTGCCCT
TCCTGTCACTGGTTGCTGTTGTGGTTTGCCACATGGTCATGATCAAGAGA
ATAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_o19.b1 MSMg01no218_o19.b1 CHROMAT_FILE:
MSMg01no218_o19.b1 PHD_FILE: MSMg01no218_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:04 2005
         (211 letters)



>mm_chr1_174363837_174364447
          Length = 611

 Score =  400 bits (207), Expect = e-116
 Identities = 207/207 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcgacagaagtcatagctaaaaataagcagaggaaatataaaagtccccagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcgacagaagtcatagctaaaaataagcagaggaaatataaaagtccccagag 264

                                                                       
Query: 65  aaaaagactcagtgaggaggaccctgagtgtgctactccggttggggtggggattgggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaagactcagtgaggaggaccctgagtgtgctactccggttggggtggggattgggta 324

                                                                       
Query: 125 ggcgttctgagttatagagaacaataatcaaagaaggatgactgacagagctaggcattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcgttctgagttatagagaacaataatcaaagaaggatgactgacagagctaggcattg 384

                                      
Query: 185 aagatagtggggggtgggagtggagct 211
           |||||||||||||||||||||||||||
Sbjct: 385 aagatagtggggggtgggagtggagct 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no218_o19.g1 MSMg01no218_o19.g1 CHROMAT_FILE:
MSMg01no218_o19.g1 PHD_FILE: MSMg01no218_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:04 2005
         (288 letters)



>mm_chr1_174524439_174525126
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtctgcattggggacattggctgcagcagcctggaattgccccttaatggaaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catgtctgcattggggacattggctgcagcagcctggaattgccccttaatggaaggaga 429

                                                                       
Query: 61  aacaaacacacaattgggagccctgtggctgccctctgctggccttctctggtactcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aacaaacacacaattgggagccctgtggctgccctctgctggccttctctggtactcaag 369

                                                                       
Query: 121 aatttatgtgctggctacactcaggctagtccattcacaggagacctacatcttaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatttatgtgctggctacactcaggctagtccattcacaggagacctacatcttaaaaga 309

                                                                       
Query: 181 tggagattgggagtgcagttcaattggtagagtacttgctaggcatgagaaaaaccctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tggagattgggagtgcagttcaattggtagagtacttgctaggcatgagaaaaaccctgg 249

                                                           
Query: 241 aagcatctttcatacccagtgggtggtgagtacctgaggtctcagcat 288
           |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 248 aagcatctttcaaacccagtgggtggtgagtacctgaggtctcagcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)