Query= MSMg01no231_b11.b1 MSMg01no231_b11.b1 CHROMAT_FILE:
MSMg01no231_b11.b1 PHD_FILE: MSMg01no231_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:17 2005
(666 letters)
>mm_chr1_76435238_76436304
Length = 1067
Score = 1268 bits (656), Expect = 0.0
Identities = 662/664 (99%), Gaps = 1/664 (0%)
Strand = Plus / Minus
Query: 4 ggaattccctaagtgccagagaactctgatgttttccagaagggctaattctgagtcaac 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ggaattccctaagcgccagagaactctgatgttttccagaagggctaattctgagtcaac 808
Query: 64 agatttgg-tttttttcccactgtacagacaggtttagccctctctcaatacccaagtgg 122
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 agatttggttttttttcccactgtacagacaggtttagccctctctcaatacccaagtgg 748
Query: 123 atccccagtgacaaggtcaaggcttcagaggatctaggaacagaatatattgggaagtat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atccccagtgacaaggtcaaggcttcagaggatctaggaacagaatatattgggaagtat 688
Query: 183 gactatctgtgttgctatgacatcagagatcaccaatgtgtgaccagtactgctagtggt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gactatctgtgttgctatgacatcagagatcaccaatgtgtgaccagtactgctagtggt 628
Query: 243 tccctactgtattgtgtgacaatagggtggagcattccctcagtgtcagaaactaaactc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tccctactgtattgtgtgacaatagggtggagcattccctcagtgtcagaaactaaactc 568
Query: 303 agtctaattttatttttaccttttacagccaaaaaacacaactgcccacttttatggttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agtctaattttatttttaccttttacagccaaaaaacacaactgcccacttttatggttt 508
Query: 363 gtgtataaaaatataagcccatgtcactgaaataattttgaccaaaaaaatatttaatac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgtataaaaatataagcccatgtcactgaaataattttgaccaaaaaaatatttaatac 448
Query: 423 tgttttttttttctccttcactgaagtgatagatctaactaataggcaaaataaacattt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgttttttttttctccttcactgaagtgatagatctaactaataggcaaaataaacattt 388
Query: 483 acgctgaacagcacctacttttgtctttaagggtttccgtagttggtcagtcatctcata 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acgctgaacagcacctacttttgtctttaagggtttccgtagttggtcagtcatctcata 328
Query: 543 tagctcagtgcttatagtccgaagtgaaatacacttgcattacaattcatttttttagtg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tagctcagtgcttatagtccgaagtgaaatacacttgcattacaattcatttttttagtg 268
Query: 603 gattgaacttttctgtcaggattttttttccttccctgttctcatggcttcaagtgttaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gattgaacttttctgtcaggattttttttccttccctgttctcatggcttcaagtgttaa 208
Query: 663 cgtt 666
||||
Sbjct: 207 cgtt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_b11.g1 MSMg01no231_b11.g1 CHROMAT_FILE:
MSMg01no231_b11.g1 PHD_FILE: MSMg01no231_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:17 2005
(513 letters)
>mm_chr1_76364817_76365730
Length = 914
Score = 971 bits (502), Expect = 0.0
Identities = 511/514 (99%), Gaps = 1/514 (0%)
Strand = Plus / Plus
Query: 1 agatcccagtagaaggatccattgttggatggtagggctgtatgaatagatgattttgga 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agataccagtagaaggatccattgttggatggtagggctgtatgaatagatgattttgga 260
Query: 61 caggatctatgagccccgaatgtggatcactaaaccatttacaattcattactgcattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggatctatgagccccgaatgtggatcactaaaccatttacaattcattactgcattgt 320
Query: 121 aaagattcatatcccttccatttttatcacatcttgaggccaagaattttttaagggtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagattcatatcccttccatttttatcacatcttgaggccaagaattttttaagggtca 380
Query: 181 tttagctttcagaaaactatgaattatgttgaaggcattgttctttctgtgactttaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagctttcagaaaactatgaattatgttgaaggcattgttctttctgtgactttaatg 440
Query: 241 tgctcatttatagagaagttataggaaaatacttttgcttaagcccatatctgaacccca 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tgctcatttatagagaagttataggaaaatacttttgcttaagcccaaatctgaacccca 500
Query: 301 tacaatcccctacataaagtaatttgtcattaatgacctgttggattctccatgctcact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaatcccctacataaagtaatttgtcattaatgacctgttggattctccatgctcact 560
Query: 361 gctgattaaacaaatatttttcttaatccatgatagcatccagagttaaaaaaaaa-gtt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 gctgattaaacaaatatttttcttaatccatgatagcatccagagttaaaaaaaaaagtt 620
Query: 420 tgtgtttttcgaataatgagacttgagctttgcaaactcaggtattgaagtatccagagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtttttcgaataatgagacttgagctttgcaaactcaggtattgaagtatccagagc 680
Query: 480 agttgtagattgtgtgaaattcttgactgcatta 513
||||||||||||||||||||||||||||||||||
Sbjct: 681 agttgtagattgtgtgaaattcttgactgcatta 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
