BAC Information

Click to search

BAC

Clone NameMSMg01-231D08
Chromosome1 (Build37)
Map Location 102,143,123 - 102,143,439
singlet/doubletsinglet
Overlap geneC230078M14Rik
Upstream geneLOC633295, EG666200
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231D08.T7 (MSMg01no231_d08.b1)MSMg01-231D08.TJ (MSMg01no231_d08.g1)
ACCAG398100AG398101
length723729
length of high quality
(start - end)		321 (46 - 366)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no231_d08.b1 PHD_FILE: MSMg01no231_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:26 2005CHROMAT_FILE: MSMg01no231_d08.g1 PHD_FILE: MSMg01no231_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCTTCAGAAAGAAAGAGATTCCATTTTGCTGCAAACAAAGATG
CTTTGGAGTTAGCAAAGTTTGTCTCTATTAAAAACACCGACCTGTAACGT
CTGCATTGCTGCTGAAGAGTGACTATCAGGAGTTCATGCAAAGAGCTGCA
CTCCTTAGTGAAAAGGACAATGGTAGACACAGCATGGCTCTTCAGGACAC
ATTTTTACACAAATAGAATAGATGTAAGACCTGGCAGAGCAGACTGATTC
ATGTTTTCATATCTGAAGGAAATCCTGCGGACAGTTCTGGCAGATAATTT
AGTGCCTAAGGTACAATTTGAAATGTCCTTGCCACGTTCTCTCTCATTTT
TGATAATGATAGTATTCAGACGGCAAAATGCTTTTATTTAGAACTCACCT
TTTCAAGTACCATGATCAATGCTATAGTCACCATTTTTATTCCTACAGTA
AAATATGGAAACAAATATGAAACTTAGTACATGTGTGTGTACATGTGTGT
GTGTATTCATGTATGTATGTATGTATATATGTATCTGAGTACACATTTAT
ATGTTAATGTAGCAGTCAGAGATTGACATCAGGTGTCTCTCCATCATTCT
TGTAGTGCTACCCACCCCGACTTTTAAATTTGATGTGTTCTTGTCATGCA
GTACACATGAAGTCTGAAGAAAN

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATATTTTGGATATTTGCCC
TTTATCAGATGTAGGGTCACTGAAGACCTTACCCCAATCTATTGGTTGCC
ATTTTGTCTGATTGATAGTGTCTTTTGTCTTGCAGAACTTTTTCTATTTC
ATGAGGTCCCATTTATCAATTATTGTTCTTAGAGCCTGGGTGAACCGTTG
GAATTCTTTTCAGGAAAATTTCCCATGTGCCAATCTTTTCTATGCTATTT
TCCACTTTATCTCCTATTTGATTCAATGTATTTGCTTTTATATTGAGGTC
CTTGACCCACTTGGAGATTTATGCTAGACGCACCCCCTCTGGATCAATTT
TTATTCTTCAACATGTTGACTGCCACCTTCACAAGCATGGTTTATTGAAG
ATGGTTTCGGTTCTCCCACTGTGTGGTTTTGCCTTCTTTGTCAAAGATCA
AGTGTTCATAGATGTGTGGGTTTATTTCTAGGTCTTTAGTTCTAATCCAT
TGATCAACCTGTCTGTCTCTGTACCAATACCATGTAGTTTTTATTATTAT
TACTATTACTCTGTAGTGCAGCTTAAGATCAGGGTTAATGACAGAGCTTC
TGGCAAAAGTTCTTTTATGTTTGAGAATTGCTTTTACTATCTTGCGTTTT
TTATTTTTCCATATGAAGATGAGAATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_d08.b1 MSMg01no231_d08.b1 CHROMAT_FILE:
MSMg01no231_d08.b1 PHD_FILE: MSMg01no231_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:26 2005
         (321 letters)



>mm_chr1_102142919_102143639
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtcttcagaaagaaagagattccattttgctgcaaacaaagatgctttggagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattctgtcttcagaaagaaagagattccattttgctgcaaacaaagatgctttggagt 462

                                                                       
Query: 65  tagcaaagtttgtctctattaaaaacaccgacctgtaacgtctgcattgctgctgaagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tagcaaagtttgtctctattaaaaacaccgacctgtaacgtctgcattgctgctgaagag 402

                                                                       
Query: 125 tgactatcaggagttcatgcaaagagctgcactccttagtgaaaaggacaatggtagaca 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 401 tgactatcaggagttcatgcaaagagctgcagtccttagtgaaaaggacaatggtagaca 342

                                                                       
Query: 185 cagcatggctcttcaggacacatttttacacaaatagaatagatgtaagacctggcagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cagcatggctcttcaggacacatttttacacaaatagaatagatgtaagacctggcagag 282

                                                                       
Query: 245 cagactgattcatgttttcatatctgaaggaaatcctgcggacagttctggcagataatt 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 281 cagactgattcatgttttcatatctgaaggaaatcctgcagacagttctggcagataatt 222

                            
Query: 305 tagtgcctaaggtacaa 321
           |||||||||||||||||
Sbjct: 221 tagtgcctaaggtacaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |