BAC Information

Click to search

BAC

Clone NameMSMg01-231E07
Chromosome1 (Build37)
Map Location 54,419,913 - 54,420,197
singlet/doubletsinglet
Overlap gene4930511H11Rik
Upstream geneEG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
Downstream geneGtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231E07.T7 (MSMg01no231_e07.b1)MSMg01-231E07.TJ (MSMg01no231_e07.g1)
ACCAG398139AG398140
length683723
length of high quality
(start - end)
322 (3 - 324)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no231_e07.b1 PHD_FILE: MSMg01no231_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:31 2005CHROMAT_FILE: MSMg01no231_e07.g1 PHD_FILE: MSMg01no231_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCCGCGGAATTACAGAACGCACTGTAGGCCTAGACCTTCTGGTACAG
AATTTAGCATTACAATACATAGCAAAAGATCAAACCTCAATAATTCCCCT
TTTTGTCTAAATAGAAAGGGTCTTTCTCTTATAATAATAAACAACAGGGA
CTGGAGAGATGGCTCAGAGATTTAGAGCACTGTCTGTTCTTCCAGAGGTC
CTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACTATCTGTAATA
GGATCAGATGCCTTCTTCTGGTGTGTCTGAAGATAGTGACAATGTGCTTA
CATACTTTAAATAAATAAATCTTATTTATACCCCCCCCCACATAGTAGGA
ACAATAATGAAATTATTATAAAAATTACCACCCAAGGGTTACATTGAAAA
GTTCTAATCTATATTTGACAACTCAGGAAAAAGTATTCTATTAGCTATCA
TATCCTGGTGACTTCAGAGTTCTGTACATAAATCATTTTCTAACCTATTA
AATACCTTTACAGACCTAGAGCATCTTCTCAAATCCTAAACAACTTCTAG
TAAGACTATGACTTTCTAATCTTTAACCCATCAGAGACCCGAGAAGGGAT
AAATACTACCTGAGTATTCAGGAAGCACAGGATGCAGCTTCCAAAAATAA
AGCAATGACAGAGACAGCTGACACTTAGATAGT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTCAGGAGATCCAGTGCCCT
CTCTGATCTTATTGGGAATGAGGCCCACCCATGGTATGCATACACATAGG
CAAACAGAATAATCATACACATAAATAAATCTAAAATTAAAAACCCGAAG
CCATAAAGGAAACATCTGTGATAATGGCGAGTATGTGAGGAAACCTGGCA
ACAGAGTGTGCCCATGGTGAGAAGCACGGATGTGACCTGAGCATTGCTGA
GCCTCAGCCCTCCTTGTATTAGCCATGTAGTCATTGTCTCTAAGTGACTT
GACTTCTGGATTTATTCTTCTCCNGCAAACCCAGGTCATCACAAGTACTC
CTCATGTTTGTTTAAACAACCACACTTGAAATAAACACCTGGCAAACACG
TCTAGAGATTAGTGTTGGTCTGCGTTGAGGTAGCCGTGGAGAACCTCATG
GGCCCGAGCGATGCAACAGAAGAGGTGGGGACCGTTAAGATCTAAAGAAA
GGACTCCTGTGTGAGAGCCAGGACAGGAAGCCTGTACTGCATGCGCCTGT
CGCCCTTCTCAGTCCTCCTCTTTAACAAGCTGTGTGAATTACCACACAAA
TCGTACATTGCACTTCACAGTCAAGAAACCTCAAAATGTACATTTTGACA
AATTCCCTTAGTCTCAGCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_e07.g1 MSMg01no231_e07.g1 CHROMAT_FILE:
MSMg01no231_e07.g1 PHD_FILE: MSMg01no231_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:31 2005
         (287 letters)



>mm_chr1_54419713_54420399
          Length = 687

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%), Gaps = 2/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtttcaggagatccagtgccctctctgatcttattgggaatgaggcccacccatggta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cagtttcaggagatccagtgccctctctgatcttattgggaatgaggcacacccatggta 260

                                                                       
Query: 61  -tgcatacacataggcaaacagaataatcatacacataaataaatctaaaattaaaaacc 119
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 at-catacacataggcaaacagaataatcatacacataaataaatctaaaattaaaaacc 319

                                                                       
Query: 120 cgaagccataaaggaaacatctgtgataatggcgagtatgtgaggaaacctggcaacaga 179
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 320 cgaagccataaaggaaacatctgtgataatggcgagtatgtgaggaaaactggcaacaga 379

                                                                       
Query: 180 gtgtgcccatggtgagaagcacggatgtgacctgagcattgctgagcctcagccctcctt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 gtgtgcccatggtgagaagcacggatgtgacctgagcattgctgagcctcagccctgctt 439

                                                         
Query: 240 gtattagccatgtagtcattgtctctaagtgacttgacttctggat 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtattagccatgtagtcattgtctctaagtgacttgacttctggat 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)