BAC Information

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BAC

Clone NameMSMg01-231K17
Chromosome1 (Build37)
Map Location 104,234,627 - 104,234,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231K17.T7 (MSMg01no231_k17.b1)MSMg01-231K17.TJ (MSMg01no231_k17.g1)
ACCAG398414AG398415
length733736
length of high quality
(start - end)
321 (45 - 365)348 (389 - 736)
definitionCHROMAT_FILE: MSMg01no231_k17.b1 PHD_FILE: MSMg01no231_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:01 2005CHROMAT_FILE: MSMg01no231_k17.g1 PHD_FILE: MSMg01no231_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTTTTAAAGTAACTAATTTTTCAGTAAAGAATGCCATTGGCATA
CATACAACTACAACACAAAGTAAAATGTTTTCACAATAATGGTAGAATTA
AATAGGGCAGAGGTGGCAGAGTATGAGGTAGTGGAATGTGCCTAGAATCT
TGGTAAGGATGAGTGTGTTGGAAGACCCAGAACCTCTGGAAAGATGGTAT
GAGCTTCACCTGCTTCCAACCAGGCACCTGACATGTGACCACAGTTTCCC
ATGTAGGGGATTATAACCATTAGTCACATTGGGGCAGTGCCCACAAGCCT
CTCCCCATGCAGAATTATTTTTCTCTCCCCTCTCCCACCAAGCCTATAGA
AAGCATCTGCTATCGGAACCCAACCCATCACAAAAATGTATGTAAGATCC
AATCCGGAAGGAATAAAGGTATGTGAGAATTACTCCATCGCCTGAGAGAA
TCTGTAATCTATAGGCTGTAACACTTCCTAGGGAAGAGAGCACTATTCTG
AAGTTTTCACTGCTGGAAGCTCCTCTGATCCTTTCATTCTAGCTGAGACC
TCCACTGGCTCTTCACAGGGCAGCATCTTGGTGGCCTGGGCAGCAGTAGA
GTGAATGCAGCTGTGGTGTCCTGAGCAGCACAGCTGTCACACTTTTCTCT
CCCAGCTTATGCCCTCTCCCCTTCACTTGAACA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTAATACCGGAGGATC
CAGCAATACCTCTCTTTTTATTATGCCCCCCCTGCCAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTCATTTATAATAACCAGAAGCTGGAAAG
AACTGAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAG
CCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATG
AAACTCAAGAAAAATGAAGACTGAAGTGTGGACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_k17.b1 MSMg01no231_k17.b1 CHROMAT_FILE:
MSMg01no231_k17.b1 PHD_FILE: MSMg01no231_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:01 2005
         (321 letters)



>mm_chr1_104234423_104235144
          Length = 722

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgttttaaagtaactaattttt-cagtaaagaatgccattggcatacatacaa 63
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgttttaaagtaactaattttttcagtaaagaatgccattggcatacatacaa 264

                                                                       
Query: 64  ctacaacacaaagtaaaatgttttcacaataatggtagaattaaatagggcagaggtggc 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctacaacacaaagtaaaacgttttcacaataatggtagaattaaatagggcagaggtggc 324

                                                                       
Query: 124 agagtatgaggtagtggaatgtgcctagaatcttggtaaggatgagtgtgttggaagacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagtatgaggtagtggaatgtgcctagaatcttggtaaggatgagtgtgttggaagacc 384

                                                                       
Query: 184 cagaacctctggaaagatggtatgagcttcacctgcttccaaccaggcacctgacatgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaacctctggaaagatggtatgagcttcacctgcttccaaccaggcacctgacatgtg 444

                                                                       
Query: 244 accacagtttcccatgtaggggattataaccattagtcacattggggcagtgcccacaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accacagtttcccatgtaggggattataaccattagtcacattggggcagtgcccacaag 504

                            
Query: 304 cctctccccatgcagaa 320
           |||||||||||||||||
Sbjct: 505 cctctccccatgcagaa 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)