BAC Information

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BAC

Clone NameMSMg01-231M09
Chromosome1 (Build37)
Map Location 102,925,132 - 102,925,439
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231M09.T7 (MSMg01no231_m09.b1)MSMg01-231M09.TJ (MSMg01no231_m09.g1)
ACCAG398487AG398488
length757714
length of high quality
(start - end)
319 (46 - 364)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no231_m09.b1 PHD_FILE: MSMg01no231_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:08 2005CHROMAT_FILE: MSMg01no231_m09.g1 PHD_FILE: MSMg01no231_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAATCCACAATAGGCTGTGACCACCAGACGTGGACCCACAGTCG
CTCCACTTATGTTTGAAAAATCAGTTATAAACAAGGAGATACTGCTCCCA
AACCATACCCTAACATCTCCTGCCATACTCCTTACCATTATATTCAAATG
TCATCCTCTGAAACTGGAAACAAGCCCCCAATACAAGTTAACTTGGTTGC
TTGTAATCCCAACACTGGAAACAGAGTTGAATACCATGGATCCTTCAGAC
TTGTTAGGCTGATACTATTTTAAGGGCACTACATTTTAAGTGCACATTAC
AGCACAATAATAATCTCTAACCTCACCACCTTATATTGTTGTTCCACCTA
TAGTGTTGTAGACCCCCCCACCCCACACACCAGCAAGATTTTGCTGAAAG
GTACAGGGGAATGCCAGGGCCAAAAACTGGAAATGGGTGGGTAGTGGGAG
TGGCGCCCTTTTTTTTTTTTTTTTTCTTTTCCTCCTTCTCTCCCCCTCTT
CCTCCTCCTTTTTTTCCCCCCTATACTTATCTCCTTCCCCCTTTTTTCCT
CGCCTTTCTTCCCCTCTTCTCCCTTTTATTTTTTTTTTCTCCTCCTCTCC
CCCCTTTTTTCTCTTCCTCCTTTCTTTTCCCCCCCCTTTTTTTTTATCCC
CCCTATCCCATTTATTTTTCTCTCTCCCACCTAATTTCCTCTCCCTCTTC
TTCCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATAACCACAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTACCCCTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAG
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGA
ATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGTGTACACATTCACAAAGGAATTCAAACAATATGTCCCCACTGAAA
AATGGGAATTTTCCCCAAACCCAAGAAACCCCAGAAATAATAAAACATTT
TCTCTTACCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_m09.b1 MSMg01no231_m09.b1 CHROMAT_FILE:
MSMg01no231_m09.b1 PHD_FILE: MSMg01no231_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:08 2005
         (319 letters)



>mm_chr1_102924745_102925463
          Length = 719

 Score =  501 bits (259), Expect = e-146
 Identities = 297/311 (95%), Gaps = 3/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaatccacaataggctgtgaccaccagacgtggacccacagtcgctccactta 64
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gaattccaaatccacaa---gctgtgaccaccagacgtggacccacagtcgctccactta 639

                                                                       
Query: 65  tgtttgaaaaatcagttataaacaaggagatactgctcccaaaccataccctaacatctc 124
           ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||  |||
Sbjct: 638 tgtttgaaaaatcagttataaacaaggagatactgctcccccaccatacccaaacgcctc 579

                                                                       
Query: 125 ctgccatactccttaccattatattcaaatgtcatcctctgaaactggaaacaagccccc 184
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 578 ctgccatattccttaccattatattcaaatgtcatcctctgaaactgtaaacaagccccc 519

                                                                       
Query: 185 aatacaagttaacttggttgcttgtaatcccaacactggaaacagagttgaataccatgg 244
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 518 aaaacaagttaacttggttgcttgtaatcccagcactggaaacagagttgaataccatgg 459

                                                                       
Query: 245 atccttcagacttgttaggctgatactattttaagggcactacattttaagtgcacatta 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 458 atccttcagacttgctaggctgatactattttaagggcactacattttaagtgcacattg 399

                      
Query: 305 cagcacaataa 315
           |||||||||||
Sbjct: 398 cagcacaataa 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)