BAC Information

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BAC

Clone NameMSMg01-231P09
Chromosome1 (Build37)
Map Location 98,958,186 - 98,958,468
singlet/doubletsinglet
Overlap geneSlco6c1
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430
Downstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231P09.T7 (MSMg01no231_p09.b1)MSMg01-231P09.TJ (MSMg01no231_p09.g1)
ACCAG398620AG398621
length725725
length of high quality
(start - end)
236 (128 - 363)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no231_p09.b1 PHD_FILE: MSMg01no231_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:21 2005CHROMAT_FILE: MSMg01no231_p09.g1 PHD_FILE: MSMg01no231_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATAGCCATATTCAATAAATAACATATGATGAAACACCTCAAAA
ATGGCCACTCCAAAATGATTTTTACGTATCACAAATTATTTTATCCATTT
TTTAATTGAAGATTTTCTTTATTTATATTTCAAATGGTATCCCCTTTCTC
GGTTTCCACTCCAGAATCCCCCTATCCCATACCCTCACTCCTTGCTTCTA
TGAGCATGTTCCACCACCCACCCATTTCCATCTCCTTACTCTCACATTCC
CCTACACTGGGGCATCTAGCCTTCTTCACAGGACCTAGGGCCTCTCCTTC
CATTGCTGCCTTATTTAGGCCCTCCTCTGCTACATATGCGACTGGAGACA
TGGGTCCCTTCATGTGCACCCCTTGGATGAAGATTTAGTCCCTGGAGCTC
TTGGGGGTCTGGTTGGTTGACATTGTTGTTCTTTATATGGATTTTAAACC
CCTACAGCTCTTTCAATCCTTTCTCTAAGTCCTCCATTCAGGACACCATG
CTCAGACCAATGGTTGGTTGTGAGCATCTACCTCTGCATTTGTCAGGCTC
TGGCAGAGCCACTCAGGAGACAGCTATATCAGGCTCCAGTCAGCATTCAC
TTCTGACATCCATAATAGTGTCTGTGTTTGGTGTCTGTATATGGGATGGA
TCTCCGGGTGGGACAGTCTGTGGAT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTCCCATCACCCATACTGCAGTT
TACAACTGTTTGATGCTTTCCTGTGATGTGCAGATGTACACGAAAACAAA
GAACCCATACACATAAAATATATAAATAAATACTTCTTTAAAAAATGACT
TCATGAAATTTGAAGGGCTTTTTCTCTCTTCCTCCCCCCCTTTTATTGGA
TATTTTCTTTATTTACATTTCAAATGTTACCTTCTTTCCAGTTCTCCCCT
ATGAAAACCCCTTATCCTGCCCCCTCCCCCTGCCTCTATGAGGGTGCTCC
CCCACCCATTTTTTTTCTCCTGCCCCCCCCTCCTGGCAATCCCCTACATT
GGGGGCATCAAACCCTCCCACACCTCCCACTGATATCCAGCAAGGGCATT
CTCAGGATTTTCTTATATCTTTTTGTATTTTATTTTGATATCTTTGCTTG
TTATGTGCTAGAAGTCTCTTCTAATGAGAGACATGTGCAGGTGAGGGGGT
GTAAGAAAAATTAAGAAGAGAGGAGAGAATGGAAACTAATCAGTATATAT
TCCACGAGAAAAAAATCTATTTCCAAGGAAAAATTATCTACACTAGTTAT
TTAATAATTTACAAAAGTGCACATTTCATAATATCTTCATTAATCTTAAC
ATAGATTATATTGCTATGCTCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_p09.g1 MSMg01no231_p09.g1 CHROMAT_FILE:
MSMg01no231_p09.g1 PHD_FILE: MSMg01no231_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:21 2005
         (283 letters)



>mm_chr1_98957986_98958668
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcccatcacccatactgcagtttacaactgtttgatgctttcctgtgatgtgcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcccatcacccatactgcagtttacaactgtttgatgctttcctgtgatgtgcagat 260

                                                                       
Query: 61  gtacacgaaaacaaagaacccatacacataaaatatataaataaatacttctttaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacacgaaaacaaagaacccatacacataaaatatataaataaatacttctttaaaaaa 320

                                                                       
Query: 121 tgacttcatgaaatttgaagggctttttctctcttcctcccccccttttattggatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacttcatgaaatttgaagggctttttctctcttcctcccccccttttattggatattt 380

                                                                       
Query: 181 tctttatttacatttcaaatgttaccttctttccagttctcccctatgaaaaccccttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttatttacatttcaaatgttaccttctttccagttctcccctatgaaaaccccttat 440

                                                      
Query: 241 cctgccccctccccctgcctctatgagggtgctcccccaccca 283
           |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 cctgccccctccccctacctctatgagggtgctcccccaccca 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)