TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAACAATCATTTTATGAATGGGGATTATCCCCATATGAGGAAAT
ATATTAAAAGGTCATAGCATTAAGGAGGTTGAGAACCACTGACCTAGTTG
ACCTCAACATGCAGATAGAGCCATTGGACTCTCCAACTTAAGATACATAA
AGCAATCTAATAAATCTCCTGTGCAACCTATATTCATTCCAGCAGTTCTG
TTTGGCTAGAGAGCACAGAGTGATTCCGCACATATACAAAATACCTATTG
TAGGCCTGGAATGGAGTATTTACAAGTATAGACCATTGATTCATACAGAG
GGGAAAACTCTCAATTAAGAACTCATGTTATGTTTCATGCCACACAGGTG
CACTGAGACTACTTGAAACAGGCTTCCTTATTCAGGACTAGAAGAAGCTC
TGCATTTTAGCAGCTTCACTTCTTTTATTAATATTATAAATATTGGGACA
AGTTCTGCCAAATAAATGTAAAGTTTTGCAGTCTAGGACTTGCCATGTAA
AATACCGGTAACCAAGAGGTATATAATATGCTCTGATAATACTAAAGGAC
CAAAGACAGACTAAAGCACAATTCCAGGTTATGTCTCCTGGATTCCAGAC
CATCTCAGGTAGAAACACTGAGCCAGATGTGCCAATGGAATGAAGAANAC
TTCAGG

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCCTGCCTTAACCACTTGTTG
ACATGTGAAAAGGAACAAAAAGACTTCTAACACTGGAGAAAGTTCAAGGC
CAGACATACCTCGTAAAGCTGTAATGTGTCCCGCAGTTCTGGTTCTGCCT
CGCGAACGAGGGATCTCCCTTGCTCCGGTGTGATGGTAGTTCCCAGGTTC
CTTGGCGCCACTTATTGCCCAAGCTTTTGTCCCCGCCGGCAAGAACACGC
TCAGGACAACCGGAATCTTCTGCGGCAAAGCTTTTATTGCTTACTTATCA
GGAGGGAAGACCCCGAACCAGGAAAATGGCGCTGCTTATATAGCCCGCAG
CATGACGTTTCAGCACCTGATGTGGTGTGACAGCTCCTGATTCGTTGCTC
GCCCATCACCCCATTACTACTCCGCGAGATGGGCAGTGACTAGGCGTGAG
TTCACTCTTGCACTTGCACATAAGGCTTGTTTACTAGTTAGGCGCAGTGG
AAGCTAGTGCCATCTTATAATGGCGATTGCTCACGGAACGGCTCTCCACA
GATTCCTTTAAAAATAACAAGATCTTAGCAATGTTAGTAGTCTACTGAGC
AGTATACAGTTACCTGTTTCTTGAATATGCTCTTACATTATATACCAATA
T

Query= MSMg01no232_a03.b1 MSMg01no232_a03.b1 CHROMAT_FILE:
MSMg01no232_a03.b1 PHD_FILE: MSMg01no232_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:24 2005
         (652 letters)



>mm_chr1_126330649_126331700
          Length = 1052

 Score = 1199 bits (620), Expect = 0.0
 Identities = 641/648 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaacaatcattttatgaatggggattatccccatatgaggaaatatattaaaa 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcacaacaatcattttatgaatggggattatccccacatgaggaaatatattaaaa 264

                                                                       
Query: 65  ggtcatagcattaaggaggttgagaaccactgacctagttgacctcaacatgcagataga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ggtcatagcattaaggaggttgagaaccactgacctagttgacctcaacatgcaaataga 324

                                                                       
Query: 125 gccattggactctccaacttaagatacataaagcaatctaataaatctcctgtgcaacct 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 gccattggactctccaacttaagatacataaaccaatctaataaatctcctgtgcaacct 384

                                                                       
Query: 185 atattcattccagcagttctgtttggctagagagcacagagtgattccgcacatatacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattcattccagcagttctgtttggctagagagcacagagtgattccgcacatatacaa 444

                                                                       
Query: 245 aatacctattgtaggcctggaatggagtatttacaagtatagaccattgattcatacaga 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatatctattgtaggcctggaatggagtatttacaagtatagaccattgattcatacaga 504

                                                                       
Query: 305 ggggaaaactctcaattaagaactcatgttatgtttcatgccacacaggtgcactgagac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggggaaaactctcaattaagaactcatgttatgtttcatgccacacaggtgcactgagac 564

                                                                       
Query: 365 tacttgaaacaggcttccttattcaggactagaagaagctctgcattttagcagcttcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacttgaaacaggcttccttattcaggactagaagaagctctgcattttagcagcttcac 624

                                                                       
Query: 425 ttcttttattaatattataaatattgggacaagttctgccaaataaatgtaaagttttgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcttttattaatattataaatattgggacaagttctgccaaataaatgtaaagttttgc 684

                                                                       
Query: 485 agtctaggacttgccatgtaaaataccggtaaccaagaggtatataatatgctctgataa 544
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 685 agtctaggacttgccatgtaaaataccggtaaccaagaagtatataatatgctctgataa 744

                                                                       
Query: 545 tactaaaggaccaaagacagactaaagcacaattccaggttatgtctcctggattccaga 604
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 tactaaaggaccaaagacagactaaagcacaattccaggttatatctcctggattccaga 804

                                                           
Query: 605 ccatctcaggtagaaacactgagccagatgtgccaatggaatgaagaa 652
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 805 ccatctcaggtagaaacactgagccagatgtgccaatagaatgaagaa 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no232_a03.g1 MSMg01no232_a03.g1 CHROMAT_FILE:
MSMg01no232_a03.g1 PHD_FILE: MSMg01no232_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:24 2005
         (626 letters)



>mm_chr1_126370987_126372012
          Length = 1026

 Score =  567 bits (293), Expect = e-165
 Identities = 299/301 (99%)
 Strand = Plus / Minus

                                                                        
Query: 326  catgacgtttcagcacctgatgtggtgtgacagctcctgattcgttgctcgcccatcacc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 catgacgtttcagcacctgatgtggtgtgacagctcctgattcgttgctcgcccatcacc 967

                                                                        
Query: 386  ccattactactccgcgagatgggcagtgactaggcgtgagttcactcttgcacttgcaca 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  ccattactactccgcgagatgggcagtgactaggcgtgagttcactcttgcacttgcaca 907

                                                                        
Query: 446  taaggcttgtttactagttaggcgcagtggaagctagtgccatcttataatggcgattgc 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  taaggcttgtttactagttaggcgcagtggaagctagtgccatcttataatggcgattgc 847

                                                                        
Query: 506  tcacggaacggctctccacagattcctttaaaaataacaagatcttagcaatgttagtag 565
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  tcacggcacggctctccacagattcctttaaaaataacaagatcttagcaatgttagtag 787

                                                                        
Query: 566  tctactgagcagtatacagttacctgtttcttgaatatgctcttacattatataccaata 625
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 786  tctactgagcagtatacagttacctgtttcttgaatatgctctgacattatataccaata 727

             
Query: 626  t 626
            |
Sbjct: 726  t 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)