BAC Information

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BAC

Clone NameMSMg01-232A19
Chromosome1 (Build37)
Map Location 135,095,929 - 135,096,238
singlet/doubletsinglet
Overlap genenone
Upstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232A19.T7 (MSMg01no232_a19.b1)MSMg01-232A19.TJ (MSMg01no232_a19.g1)
ACCAG398684AG398685
length790754
length of high quality
(start - end)
314 (48 - 361)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no232_a19.b1 PHD_FILE: MSMg01no232_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:27 2005CHROMAT_FILE: MSMg01no232_a19.g1 PHD_FILE: MSMg01no232_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAGCCAGGCGCCTGGGACCACAGAGCATGTGCTCACTGCTGT
ACATGTAGCCTTGTGGATCTTCGCGCTCCCGATATGGAGATCAGTTATTT
GCTCTATGATAGGGTGGTTTAAATGAAAAGGAGAGGTGTGTCTGGTTGGT
GCTTCCTGCACACTGTCTACTTGCCGTGATGCCTTGTCTTTAAGCATCGG
GATGGTGTTCTACACACCTGGCAGTCTTCATAGCAAGTGACAAGGTTGGG
GGACTTATTCTCAACATCCTTTTTTCGACAGTAGTTTACCAACCCATGAT
ATGCCTTCCATGTATCCCAGCGCCAGGATGGAGGGGTCTAGTTCCTGGGT
TTTCTCCCATGATCCCCCTGTCCCTTGTAATCACAAGGCATATTGACAAC
CCTCTGGCTCTCCCATCCTTTTCCTCTGTAGCTGCTGAGCTGTCCAACTC
TATTCTCTCCCTTGTTTGTTTTCTTCTTGCTTCCTTATCCCTTTTTTTGC
ATCACTCCCTATATCTTTATTCTCCTCCCTCCTATTTTCCTCCTTCCTTC
TTCCCCGTCTTTCCCCTCTACTTCCTCTCTTCGTCTTTCCTTTCCTTTTT
CTCTTCCCCTTTTTTTTTCCTTTCCCCCCTCCTTTCCTCCCTTTCCCTTT
CCACTACGCGTTCCCCTCTCTTTTTCCCCTTTCTTTTCTCCTTTCTTTTA
TTTACCCTGTATTTCCACCACTCCTCCCTTCCCTCTTTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGTTGGCCTCG
AACTCAGAAGATCTGTCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAGGC
GTGCGCCACCACCGCCTGGCTCAACGAATGAGTTGCCAGTTTTAAGCCAA
CTTTCTGTTATCAATGTTACAAATTTTTAATCATACCCAATAATTTATAA
GCCAATAATCTATAAGCAAGACGTGCAGAACATATTTATCCCTTTAAAGG
CAGTCAGAAACAAAAAATGAAATGGTTGCATACATTTACTTATTTAAACC
AGACAAAACTCTTTATTTTTCCACCTCGCCCTTCAAGAGAGGAGCACCTT
GTCACTTGCTGGACCCCACAATCACAGTCACAGAGATTATTCTAGGAGAA
ACAGCCATCAGTTCCCTTATCGTAGAACTTGAGAAGCTGCTGGCCCCTTT
AAGAGCAGCTTTTGCAGACAATCAGCTCCTGGAAGGGCTTCTCCAGCTGC
ACCAGACTCCTAACTACAGGTGCAGGGCTCAGAAGGCCAATTGAGAATGT
TTTTAATTTATTTTTTTCATTTCCTCTTTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCCTCTTTCCTTTCCCTTTCT
CCTTTCCTAACCAGTCACATTTTTCCCTTTTCCCTACCCCTCCCTTCCCA
TTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_a19.b1 MSMg01no232_a19.b1 CHROMAT_FILE:
MSMg01no232_a19.b1 PHD_FILE: MSMg01no232_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:27 2005
         (314 letters)



>mm_chr1_135095725_135096438
          Length = 714

 Score =  476 bits (246), Expect = e-139
 Identities = 294/314 (93%), Gaps = 8/314 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaagccaggcgcctgggaccacagagcatgtgctcactgctgtacatgtagcct 64
           ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 205 gaattcaaagccaggtgcctgggaccacagagcatgcgctcactgctgtacaagtagcct 264

                                                                       
Query: 65  tgtggatcttcgcgctcccgatatggagatcagttatttgctctatgatagggtggttta 124
           |||||| | | | ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 265 tgtggaacctggggctcccgatgtggagatcagatatttgctctatgatagggtggttta 324

                                                                       
Query: 125 aatgaaaaggagaggtgtgtctggttggtgcttcctgcacactgtctacttgccgtgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgaaaaggagaggtgtgtctggttggtgcttcctgcacactgtctacttgccgtgatg 384

                                                                       
Query: 185 ccttgtctttaagcatcgggatggtgttctacacacctggcagtcttcatagcaagtgac 244
           ||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct: 385 ccttgtctttaagcatcgggacggtgttttacaaacctggcagtcttcatagcaagtgac 444

                                                                       
Query: 245 aaggttgggggacttattctcaacatcctt----ttttcgacagtagtttaccaacccat 300
           ||||||||||||||||||||||||||||||    |    |||||||||||||||||||||
Sbjct: 445 aaggttgggggacttattctcaacatccttagcat----gacagtagtttaccaacccat 500

                         
Query: 301 gatatgccttccat 314
           ||||||||||||||
Sbjct: 501 gatatgccttccat 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)