BAC Information

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BAC

Clone NameMSMg01-232B08
Chromosome1 (Build37)
Map Location 106,499,681 - 106,499,969
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383546
Downstream geneLOC100041134, Cdh20, Rnf152, LOC100041985, Pign
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232B08.T7 (MSMg01no232_b08.b1)MSMg01-232B08.TJ (MSMg01no232_b08.g1)
ACCAG398707AG398708
length719766
length of high quality
(start - end)
322 (46 - 367)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no232_b08.b1 PHD_FILE: MSMg01no232_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:29 2005CHROMAT_FILE: MSMg01no232_b08.g1 PHD_FILE: MSMg01no232_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAGTAAGGGCAAGTATTTTTTAAAAACATTAAAATTTAAAATT
AATTTAAAAAATTAAAATTAATGAAAATAATTTGGGTATAATATTGTGTA
GATATATATCTAATTCATCTGATGCATGATGTCATTTAATTCTGATGTTT
CTCTATTTTTCTTGAGATGACCTGTCTATTAAAAAAGTGGGGTATTGAAA
TGACCCACTATCAATGAGTTTGTGTTAATCTATGCTTTTAAATCCAGCAA
AACAATTTTCATGAAATTGAGTGCACCATAGTTTGATGCACATATGGTTA
GATTCCTACGGTTTTATTGTTCTCCTGACACCACGGAAGTGTTCCGTTTT
GTTTGTTTGTTTGTTTTCACCCCCCTCATTGATTTTTAGATGGAATTCTA
TTGTGTTAGCTATTATAACAGCAATACTTACTTGGTTCCTGGTCCCATTT
GATTGTAGTACTTTTGTTTGTCTATTTACAAACACAGTAATGTGGTACTT
ATCTTTAATACTAAGATATGTTTCTTCTTGACATCATATATAGAGAGTTA
ATTTCTTGATTCATTAAGAAAGTTTTTTGCGTCTTTTGAATAGAGTAATG
AAGCCACTGTTATTTACACTTATTTTATTGAAATGTGTTTGCTAGATGAG
TTGTGTCGTGATGATTCTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGATTTTCTTTACAATATTCTGTT
ATACATTTCAAAATGAATATAAAACAGATTTACTCACTCACAAATAGAAA
TAGAGGTTGAAATAGAGCTGAATGGTTGTTTTAGTGAAGGTATTCATTGC
TACGAAGTGACATCATGGCCACACAAACCTTTTATAAAGAAAAGCATTTA
ATTGGGGCTGGCTTACATTTTCTGAGGTTTAGTCCATTATCATTATGGCA
AGAATCATGGTGGTACACAGGAAGGCATGGTATGACACAGGCAGGCATGG
TATTGGAGAGGTAGGTGATGGGTTCTCCCCCCCCTACTGGTAGATAGCGG
GAATAGACTTTTATTTTTTCCCCCCCCAAACAAAATATTCCCCCTTATCT
TGTTCCTTTTTCCTACCTTTTTTTTCCCCCCCCCCTTTTTCCCCCTTATT
ATTCCACCGCCCCATTTAACCTAATCCACCCCGCCTTTTTATTCCCTTCC
CTTTTCCCCTTCTTTTTTCCCCCCCCCCTTTTTTTTTTTCACCCCCCTCC
CCCATTTTTTTTTTTTTCCCCCCCCCCCCCCTTCCCCTTTTTCTCCCCCC
TTTCCCCCTTTTTTCATATTTCCCTTCCTTTTTTCCTCTTTATTTTCCCC
CCCTCCTTTTTTCTATTGTTTTTTTCCCTTTTATTTTTTCTCCCCTTTTC
CCCCCCTCCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_b08.g1 MSMg01no232_b08.g1 CHROMAT_FILE:
MSMg01no232_b08.g1 PHD_FILE: MSMg01no232_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:30 2005
         (289 letters)



>mm_chr1_106499668_106500356
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggattttctttacaatattctgttatacatttcaaaatgaatataaaacagatttact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 302 taggattttctttacaatattctgttatacatttcaaaatgaatataaaaaagatttact 243

                                                                       
Query: 61  cactcacaaatagaaatagaggttgaaatagagctgaatggttgttttagtgaaggtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cactcacaaatagaaatagaggttgaaatagagctgaatggttgttttagtgaaggtatt 183

                                                                       
Query: 121 cattgctacgaagtgacatcatggccacacaaaccttttataaagaaaagcatttaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cattgctacgaagtgacatcatggccacacaaaccttttataaagaaaagcatttaattg 123

                                                                       
Query: 181 gggctggcttacattttctgaggtttagtccattatcattatggcaagaatcatggtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gggctggcttacattttctgaggtttagtccattatcattatggcaagaatcatggtggt 63

                                                            
Query: 241 acacaggaaggcatggtatgacacaggcaggcatggtattggagaggta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  acacaggaaggcatggtatgacacaggcaggcatggtattggagaggta 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)