BAC Information

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BAC

Clone NameMSMg01-232D24
Chromosome1 (Build37)
Map Location 90,347,783 - 90,508,075
singlet/doubletdoublet
Overlap geneGlrp1
Upstream gene3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2
Downstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232D24.T7 (MSMg01no232_d24.b1)MSMg01-232D24.TJ (MSMg01no232_d24.g1)
ACCAG398817AG398818
length728735
length of high quality
(start - end)
293 (436 - 728)264 (440 - 703)
definitionCHROMAT_FILE: MSMg01no232_d24.b1 PHD_FILE: MSMg01no232_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:41 2005CHROMAT_FILE: MSMg01no232_d24.g1 PHD_FILE: MSMg01no232_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,347,783 - 90,348,075)(90,507,812 - 90,508,075)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGGTACTTCACAAACAACTGAAACAGAAACAACCTTAGGGCTTC
CGGTTCTAACTTTAACCCTTTGCACAGGATGTGTAAAGTTCTCCTGCGGT
AATTACATTAACAAACCTTTAGTCTTTCACAGTTTTGGCCGCCACATTTT
ATGCACAGCAGTGAGTTGTCAGGCTCTGTGAACTTGGTTACAATTTCTGC
TTCAGAAGGAATGGCTGTCAGGCCCAGATCCCTTTTCTCCTTGGGCTGTG
TGAGAATATTTTTAGGCAAATTGGAAGAGAAAATAAGCGCCCTGCCCACA
CTGTAGTGAGTGGTTTTTTCAACCCAAGACGGAAACGTGCTGACCAGCCA
GCAATTTTCCTTCGGAGACCGCATAATGAACAGATAGAATTACTCAGTTA
CACAGTGACAGAAAAATAATTGCGAGCTTGAAGTACCCTGAATACCTGGA
ATTGAATTTTGCAATAAATCTTTAAAATAGTCACTCATGTTTGATTTCTT
TATATGGTGTATAATGGCTTCTCCACTGAAATACAGGCGCCTTTGATTTT
CCATCTTTCTATGATGCCTCTTTTAAAAATGACAATCTTGTCTTGTGGTA
CCCACAGGTTGGCACCGTGGGCTGACTTTGCACCCAGCAGCATCACAGCT
TGGGACAGCCCTCCATGCTGCCAGCTGT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGAAAGGAGAGAGGGCAAAGACTGT
GTGTGGCAGGTGACAAGCAGCTGCCTCTGCCCCAGGCACAGTCGCTGCAC
ATAGCAAAACACTAGAAGCTTACAAAACAAACACAAACAAACCACTCACA
AAGTGAGTGCCTTCTCTAAAACCACATAATGGAGAGAAAAGAAAGCTGTT
CTCAAAAGTCAAAATAAACACAAGCCAGGCTGGGATTTGTAGACTTCAAA
TTACAAAAAAGAAAAAAAGGAAAAAAAAAAGTAGCCCTACAGGGAAGAGC
TTCCTTTTCAATCTTAATTAATCCACCACACCCCCCATGACCTTCTGTGA
CTTCCAAAGCCAAGTGCAATGACCCCTGAAAAAACCAAAGGCAACATCAT
CACCACCACCGCCAGGGGCCTCAGGAGGAAGGCGCCTCCTCAGAGCAGGC
AGACAGAGGCCAGGCTCCCAGGAGCACATGGGAAGGAGCAGAGAAGGCGA
GAACAGGGGCCCCTTGCACTCCACGCCTTCCCAATTTTTAGTTTTGTCTT
TCACTTGGGAGGTTGAGGTAGAGGATCAGACGGGCCACAGCCTCCTCAGA
TGCATGAGGTATTGGAGGCTAGCCTGTGCTAAAACAAAAAACAAAGCTAA
CAAAAAGAATGAAGGGGGAGGAGAGGAAAAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_d24.b1 MSMg01no232_d24.b1 CHROMAT_FILE:
MSMg01no232_d24.b1 PHD_FILE: MSMg01no232_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:41 2005
         (293 letters)



>mm_chr1_90347583_90348275
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaattactcagttacacagtgacagaaaaataattgcgagcttgaagtaccctgaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaattactcagttacacagtgacagaaaaataattgcgagcttgaagtaccctgaatac 260

                                                                       
Query: 61  ctggaattgaattttgcaataaatctttaaaatagtcactcatgtttgatttctttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggaattgaattttgcaataaatctttaaaatagtcactcatgtttgatttctttatat 320

                                                                       
Query: 121 ggtgtataatggcttctccactgaaatacaggcgcctttgattttccatctttctatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtataatggcttctccactgaaatacaggcgcctttgattttccatctttctatgat 380

                                                                       
Query: 181 gcctcttttaaaaatgacaatcttgtcttgtggtacccacaggttggcaccgtgggctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctcttttaaaaatgacaatcttgtcttgtggtacccacaggttggcaccgtgggctga 440

                                                                
Query: 241 ctttgcacccagcagcatcacagcttgggacagccctccatgctgccagctgt 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgcacccagcagcatcacagcttgggacagccctccatgctgccagctgt 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no232_d24.g1 MSMg01no232_d24.g1 CHROMAT_FILE:
MSMg01no232_d24.g1 PHD_FILE: MSMg01no232_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:42 2005
         (264 letters)



>mm_chr1_90507714_90508377
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcaacatcatcaccaccaccgccaggggcctcaggaggaaggcgcctcctcagagcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggcaacatcatcaccaccaccgccaggggcctcaggaggaaggcgcctcctcagagcagg 303

                                                                       
Query: 61  cagacagaggccaggctcccaggagcacatgggaaggagcagagaaggcgagaacagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagacagaggccaggctcccaggagcacatgggaaggagcagagaaggcgagaacagggg 243

                                                                       
Query: 121 ccccttgcactccacgccttcccaatttttagttttgtctttcacttgggaggttgaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccccttgcactccacgccttcccaatttttagttttgtctttcacttgggaggttgaggt 183

                                                                       
Query: 181 agaggatcagacgggccacagcctcctcagatgcatgaggtattggaggctagcctgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agaggatcagacgggccacagcctcctcagatgcatgaggtattggaggctagcctgtgc 123

                                   
Query: 241 taaaacaaaaaacaaagctaacaa 264
           ||||||||||||||||||||||||
Sbjct: 122 taaaacaaaaaacaaagctaacaa 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)