Query= MSMg01no232_e08.b1 MSMg01no232_e08.b1 CHROMAT_FILE:
MSMg01no232_e08.b1 PHD_FILE: MSMg01no232_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:43 2005
(688 letters)
>mm_chr1_111593061_111594151
Length = 1091
Score = 1251 bits (647), Expect = 0.0
Identities = 678/693 (97%), Gaps = 13/693 (1%)
Strand = Plus / Minus
Query: 5 gaattccattcctataggcttacattttatttctactgaacttaaaaatgacaatcaatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gaattccattcctataggcttacattttatttctactgaacttaaaaatgacaatcaatg 872
Query: 65 aggtgttgcttaccactaatttcaagcaaaaagaaaa----aaaa-aaaaaaccttagaa 119
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 871 aggtgttgcttaccactaatttcaagcaaaaagaaaaaaagaaaagaaaaaaccttagat 812
Query: 120 gtagcttgatgcatatgtaattcatacaaatctactgattcaagaaatgaaacacatata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gtagcttgatgcatatgtaattcatacaaatctactgattcaagaaatgaaacacatata 752
Query: 180 tgatagcctcaaaacattctggattggtaatttatcaaaaattatatatttattacttcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tgatagcctcaaaacattctggattggtaatttatcaaaaattatatatttattacttcc 692
Query: 240 aatggaagatgggaaatcaaacaatacagaaaatattaagactaatttaaaacatctcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aatggaagatgggaaatcaaacaatacagaaaatattaagactaatttaaaacatctcaa 632
Query: 300 atctactagagcctgatttaatctactttaaggaaaatatgacaactggga---aaacct 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 631 atctactagagcctgatttaatctactttaaggaaaatatgacaactgggaaagaaacct 572
Query: 357 taatgttttaggtgttgtgaaagatgatcagtatattccacagaaacagcttaatttact 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 taatgttttaggtgttgtgaaagatgatcagtatattccacagaaacagcttaatttact 512
Query: 417 gcatgttgccttacatatgtatcaaaatcatagttatgtgtgtagtaattatagaaatat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gcatgttgccttacatatgtatcaaaatcatagttatgtgtgtagtaattatagaaatat 452
Query: 477 tcatccattgcaagttcaaaaattataaaataattctatgaaattaattaaatgaaatga 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcatccattgcaagttcacaaattataaaataattctatgaaattaattaaatgaaatga 392
Query: 537 aaattagtttatacattttttttttgtgtgtatcaacattaagcttgtcactaggtctac 596
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 391 aaattagtttatac---tttttttt-tgtgtatcaacattaagcttgtcactaggtctac 336
Query: 597 ttttaagaatacaatctagagccctgggataaaactaaaatga-tttttttaactctata 655
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 335 ttttaagaatacaatctagagccctgggataaaactaaaatgattttttttaactctata 276
Query: 656 gtttaggccattttgaataatgttgcatgtggc 688
|||||||||||||||||||||||||||||||||
Sbjct: 275 gtttaggccattttgaataatgttgcatgtggc 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1091
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1081
Effective search space: 732918
Effective search space used: 732918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_e08.g1 MSMg01no232_e08.g1 CHROMAT_FILE:
MSMg01no232_e08.g1 PHD_FILE: MSMg01no232_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:43 2005
(665 letters)
>mm_chr1_111497899_111498963
Length = 1065
Score = 1255 bits (649), Expect = 0.0
Identities = 661/665 (99%)
Strand = Plus / Plus
Query: 1 cttctagaaggctttttgagagtgggtggtggtcagatcttaatatggttataaattaat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 cttctagaaggctttttgagagtgggtggaggtcagatcttaatatggttataaattaat 260
Query: 61 attaagagattatgattttattttaaatacagaggtataacttctaataattttaagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaagagattatgattttattttaaatacagaggtataacttctaataattttaagtag 320
Query: 121 gaaggattgatgcttctgtattagagaagcatttcacttgtaaatagacaattggtaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggattgatgcttctgtattagagaagcatttcacttgtaaatagacaattggtaagt 380
Query: 181 aaagaaacacaggagtaatgagcaagccaatgattatgtgtggcaataatttgttatgat 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aaagaaacacaggagtaatgagcaagccaatgattatgtgtagcaataatttgttatgat 440
Query: 241 ttgttctgattctattaaatacttagactaaataactgaagtctaagtaaattaagcttt 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ttgttctgattctattaaatacttagactaaataactgaagtttaagtaaattaagcttt 500
Query: 301 tattgcaaaaagcttcactatgctaacactgtatctgtaatgctacattttttttcagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattgcaaaaagcttcactatgctaacactgtatctgtaatgctacattttttttcagca 560
Query: 361 tatctctgcctgctcccttgtgaaatatattcctctgaaagactttttatcaacaactag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctctgcctgctcccttgtgaaatatattcctctgaaagactttttatcaacaactag 620
Query: 421 aagtcatggttttcaaaatgtcattctttaaaatttgctaagttctatagagtgaatatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtcatggttttcaaaatgtcattctttaaaatttgctaagttctatagagtgaatatc 680
Query: 481 tgtcaagcaggactggatgattcttgcctgttttaaatgtatgtaatagttaccaattct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtcaagcaggactggatgattcttgcctgttttaaatgtatgtaatagttaccaattct 740
Query: 541 ttatatgtataatgtaccacaagaataatgtaaccaggttcagcttgactgccttatctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatatgtataatgtaccacaagaataatgtaaccaggttcagcttgactgccttatctt 800
Query: 601 ctccacacagtgatgataaacaatttaggctgccttcttagtctctgaaggctctttatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 801 ctccacacagtgatgataaacaatttaggctgccttcttagtctctgaaggttctttatt 860
Query: 661 tttca 665
|||||
Sbjct: 861 tttca 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
