BAC Information

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BAC

Clone NameMSMg01-232I18
Chromosome1 (Build37)
Map Location 71,887,264 - 71,887,542
singlet/doubletsinglet
Overlap genenone
Upstream geneA830006F12Rik, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
Downstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232I18.T7 (MSMg01no232_i18.b1)MSMg01-232I18.TJ (MSMg01no232_i18.g1)
ACCAG399018AG399019
length749747
length of high quality
(start - end)
315 (41 - 355)280 (71 - 350)
definitionCHROMAT_FILE: MSMg01no232_i18.b1 PHD_FILE: MSMg01no232_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:03 2005CHROMAT_FILE: MSMg01no232_i18.g1 PHD_FILE: MSMg01no232_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCC
AACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGG
GACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTG
AAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAA
ATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGT
ATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAA
ATATTTTTGGTGACACCACCCGCATATAAAATTAACTCAAACAAGTCAAT
GGCCTTTCTCCACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA
CAACACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACT
CTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAA
GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGA
ATTGGAAGGAGCAATTTGCAAATTTGCCTGGAATAACAAAAAACCTAGG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATATCTAAAACTTGAATCTTATTCGCTTA
TACATTATCACTGTGACAATAAAGAGGGGTGTTGGGATGCATAGTCTTTT
GGCTGGAGTCCTTGCCACCATAAATAAAATACCCACTTTTATACAAGGGT
AGAAAGAAGAAATTGATACTGAGTGTCAGCCAACAGTCCCTGACACATGG
TCAAACATATAATTTTGTAGTGCTTTCAGAATGCAGCAGAATAGTTAGGT
ATCCCAAAAGCTTGAGATTCCAGGTTATTCTTACTGAGCTATGTAAAGGA
TTTGATTCGACCACCCCCCCACTAGCATTACCTGCAGACCTGTGTTCTCC
AATCAACATAACATCCCAAAGTCTTTAAAGCCAACACTTATAACTGAGAG
AGGGGCCATAAATTCTGTCACAGAAGCAAACAAAGAGTATGTCAAAGTGG
TCACGGTTATGCCATAAACCTCCCACAATGGTCTCACAAGGGTCGCAAAC
TGGTCCACCCATTATAGTCATGAGCACCAGGCTCACAGCTGATTGCTGAC
TGCAAAGACCACCCAGAACTGCCTCTCCAAGGAAGCCACTAAGAAAGCAC
TAACATTTCCAGGGGTGCTCTCAATGCAGCCGCTCTGTGGGTATAAGAAA
CATCCTTCCAAGTATCCTGCAATGTANGGAGACTAGTGACTCCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_i18.g1 MSMg01no232_i18.g1 CHROMAT_FILE:
MSMg01no232_i18.g1 PHD_FILE: MSMg01no232_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:04 2005
         (280 letters)



>mm_chr1_71887064_71887743
          Length = 680

 Score =  516 bits (267), Expect = e-151
 Identities = 276/279 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatctaaaacttgaatcttattcgcttatacattatcactgtgacaataaagaggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatctaaaacttgaatcttattcgcttatacattatcactgtgacaataaagaggggt 260

                                                                       
Query: 61  gttgggatgcatagtcttttggctggagtccttgccaccataaataaaatacccactttt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gttgggatgcatagtcttttgggtggagtccttgccaccataaataaaatacccattttt 320

                                                                       
Query: 121 atacaagggtagaaagaagaaattgatactgagtgtcagccaacagtccctgacacatgg 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacaagggtagaaaaaagaaattgatactgagtgtcagccaacagtccctgacacatgg 380

                                                                       
Query: 181 tcaaacatataattttgtagtgctttcagaatgcagcagaatagttaggtatcccaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaacatataattttgtagtgctttcagaatgcagcagaatagttaggtatcccaaaag 440

                                                  
Query: 241 cttgagattccaggttattcttactgagctatgtaaagg 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgagattccaggttattcttactgagctatgtaaagg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)