MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-232J02
Chromosome	1 (Build37)
Map Location	140,774,167 - 140,933,013
singlet/doublet	doublet
Overlap gene	LOC100042623, Dennd1b
Upstream gene	LOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik
Downstream gene	Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043143 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Ptprc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19264 MGI:97810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042596 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042596
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Atp6v1g3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338375 MGI:2450548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042600 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042600
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Nek7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59125 MGI:1890645
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC667745 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667745
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Lhx9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16876 MGI:1316721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	2310009B15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69549 MGI:1916799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019P21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75546 MGI:1922796
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	LOC100042623 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042623
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Dennd1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329260 MGI:2447812
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Crb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170788 MGI:2136343
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb41 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226470 MGI:2444487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aspm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12316 MGI:1334448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	F13b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14060 MGI:88379
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cfhr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50702 MGI:2138169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG624286 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:624286 MGI:3647418
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	EG214403 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214403 MGI:3646434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC026782 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545366 MGI:3611575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545399 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545399
definition	note : RuvB-like pseudogene pseudo : _no_value

name	EG545367 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545367 MGI:3643955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	LOC100043143 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234320 GeneID:100043143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100043143 transcript_id : XM_001480013.1

name	Ptprc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326511 GeneID:19264 MGI:97810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, receptor type, C transcript_id : NM_011210.2

name	Atp6v1g3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130425 GeneID:338375 MGI:2450548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit G3 transcript_id : NM_177397.3

name	LOC100042600 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234281 GeneID:100042600
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042600 transcript_id : XM_001478479.1

name	Nek7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130435 GeneID:59125 MGI:1890645
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NIMA (never in mitosis gene a)-related expressed kinase 7 transcript_id : NM_021605.3

name	LOC545363 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234322 GeneID:545363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC545363 transcript_id : XM_001480040.1

name	Lhx9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110611157 GeneID:16876 MGI:1316721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 9 transcript_id : NM_010714.3

name	Lhx9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131184 GeneID:16876 MGI:1316721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 9 transcript_id : NM_001025565.2

name	Lhx9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110611158 GeneID:16876 MGI:1316721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 9 transcript_id : NM_001042577.1

name	2310009B15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487010 GeneID:69549 MGI:1916799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310009B15 gene transcript_id : NM_001081226.1

name	1700019P21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234283 GeneID:75546 MGI:1922796
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : RIKEN cDNA 1700019P21 gene transcript_id : XM_001478510.1

name	Dennd1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130741 GeneID:329260 MGI:2447812
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DENN/MADD domain containing 1B transcript_id : NM_183217.2

name	Dennd1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368722 GeneID:329260 MGI:2447812
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DENN/MADD domain containing 1B transcript_id : NM_181347.2

name	Crb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18875405 GeneID:170788 MGI:2136343
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : crumbs homolog 1 (Drosophila) transcript_id : NM_133239.1

name	Zbtb41 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371904 GeneID:226470 MGI:2444487
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 41 homolog transcript_id : NM_172643.2

name	Aspm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90093357 GeneID:12316 MGI:1334448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asp (abnormal spindle)-like, microcephaly associated (Drosophila) transcript_id : NM_009791.4

name	F13b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13624320 GeneID:14060 MGI:88379
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coagulation factor XIII, beta subunit transcript_id : NM_031164.1

name	Cfhr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7656968 GeneID:50702 MGI:2138169
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement factor H-related 1 transcript_id : NM_015780.1

name	EG214403 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145727 GeneID:214403 MGI:3646434
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG214403 transcript_id : NM_001029977.2

name	BC026782 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71361675 GeneID:545366 MGI:3611575
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC026782 transcript_id : NM_001025575.1

name	EG545367 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234286 GeneID:545367 MGI:3643955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : predicted gene, EG545367 transcript_id : XM_619677.4

name	LOC100043143 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234321 GeneID:100043143
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480063.1

name	Ptprc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326512 CCDS:CCDS15330.1 GeneID:19264 MGI:97810
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005925 - focal adhesion [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0019901 - protein kinase binding [Evidence ISS] [Evidence IPI]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005001 - transmembrane receptor protein tyrosine phosphatase activity [Evidence ISS] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0042100 - B cell proliferation [Evidence IMP]; GO:0050853 - B cell receptor signaling pathway [Evidence IMP]; GO:0007166 - cell surface receptor linked signal transduction [Evidence ISS]; GO:0051607 - defense response to virus [Evidence IMP]; GO:0001960 - negative regulation of cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0006469 - negative regulation of protein kinase activity [Evidence IDA] [Evidence ISS]; GO:0001915 - negative regulation of T cell mediated cytotoxicity [Evidence IMP]; GO:0050857 - positive regulation of antigen receptor-mediated signaling pathway [Evidence IMP]; GO:0045860 - positive regulation of protein kinase activity [Evidence ISS]; GO:0042102 - positive regulation of T cell proliferation [Evidence IMP]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] [Evidence IDA]; GO:0051726 - regulation of cell cycle [Evidence IDA]; GO:0051209 - release of sequestered calcium ion into cytosol [Evidence IDA]; GO:0030217 - T cell differentiation [Evidence IMP]; GO:0042098 - T cell proliferation [Evidence IMP]; GO:0050852 - T cell receptor signaling pathway [Evidence ISS] codon_start : 1 note : lymphocyte common antigen product : protein tyrosine phosphatase, receptor type, C protein_id : NP_035340.2

name	Atp6v1g3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893577 CCDS:CCDS15331.1 GeneID:338375 MGI:2450548
definition	GO_component : GO:0016020 - membrane [Evidence IC] GO_function : GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA] GO_process : GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IC] codon_start : 1 product : ATPase, H+ transporting, V1 subunit G, isoform 3 protein_id : NP_796371.1

name	LOC100042600 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234282 GeneID:100042600
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478529.1

name	Nek7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11037792 CCDS:CCDS15332.1 GeneID:59125 MGI:1890645
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : NIMA-related expressed kinase 7 product : NIMA (never in mitosis gene a)-related expressed kinase 7 protein_id : NP_067618.1

name	LOC545363 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234323 GeneID:545363
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480090.1

name	Lhx9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754542 CCDS:CCDS15333.1 GeneID:16876 MGI:1316721
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : LIM homeobox protein 9 isoform b protein_id : NP_034844.1

name	Lhx9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909340 CCDS:CCDS15334.1 GeneID:16876 MGI:1316721
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : LIM homeobox protein 9 isoform a protein_id : NP_001020736.1

name	Lhx9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110611159 GeneID:16876 MGI:1316721
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3 product : LIM homeobox protein 9 isoform c protein_id : NP_001036042.1

name	2310009B15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487011 GeneID:69549 MGI:1916799
definition	codon_start : 1 product : hypothetical protein LOC69549 protein_id : NP_001074695.1

name	1700019P21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234284 GeneID:75546 MGI:1922796
definition	codon_start : 1 product : hypothetical protein LOC75546 protein_id : XP_001478560.1

name	Dennd1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147294 CCDS:CCDS15335.1 GeneID:329260 MGI:2447812
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : DENN/MADD domain containing 1B isoform 2 protein_id : NP_899040.1

name	Dennd1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626175 GeneID:329260 MGI:2447812
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : DENN/MADD domain containing 1B isoform 1 protein_id : NP_851992.1

name	Crb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875406 CCDS:CCDS15336.1 GeneID:170788 MGI:2136343
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0042462 - eye photoreceptor cell development [Evidence IMP]; GO:0016044 - membrane organization and biogenesis [Evidence IMP]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 exception : mismatches in translation product : crumbs homolog 1 protein_id : NP_573502.1

name	Zbtb41 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369918 GeneID:226470 MGI:2444487
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger and BTB domain containing 41 homolog protein_id : NP_766231.1

name	Aspm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87298845 GeneID:12316 MGI:1334448
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 product : calmodulin binding protein 1 protein_id : NP_033921.3

name	F13b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13624321 GeneID:14060 MGI:88379
definition	GO_process : GO:0007596 - blood coagulation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : coagulation factor XIII, beta subunit protein_id : NP_112441.1

name	Cfhr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7656969 CCDS:CCDS15337.1 GeneID:50702 MGI:2138169
definition	codon_start : 1 note : complement component factor h-like 1 product : complement factor H-related protein protein_id : NP_056595.1

name	EG214403 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145728 GeneID:214403 MGI:3646434
definition	codon_start : 1 exception : mismatches in translation product : complement factor H-related protein C protein_id : NP_001025148.2

name	BC026782 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71361676 CCDS:CCDS15339.1 GeneID:545366 MGI:3611575
definition	codon_start : 1 product : complement factor H-related protein B protein_id : NP_001020746.1

name	EG545367 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234287 GeneID:545367 MGI:3643955
definition	codon_start : 1 product : similar to complement factor H-related protein C protein_id : XP_619677.4

name	LOC100042596 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042596
definition	number : 1 pseudo : _no_value

name	LOC100042596 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042596
definition	number : 2 pseudo : _no_value

name	LOC667745 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667745
definition	number : 2 pseudo : _no_value

name	LOC667745 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667745
definition	number : 1 pseudo : _no_value

name	LOC100042623 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042623
definition	number : 2 pseudo : _no_value

name	LOC100042623 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042623
definition	number : 1 pseudo : _no_value

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 9

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 8

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 7

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 6

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 5

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 4

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 3

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 2

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 1

name	(CDS detail)
type	STS
link
xref	UniSTS:207223
definition	standard_name : BB210524

name	(CDS detail)
type	STS
link
xref	UniSTS:207221
definition	standard_name : BB209933

name	(CDS detail)
type	STS
link
xref	UniSTS:142251
definition	standard_name : D1Mit514

name	(CDS detail)
type	STS
link
xref	UniSTS:114168
definition	standard_name : AU026553

name	(CDS detail)
type	STS
link
xref	UniSTS:210366
definition	standard_name : RH136376

name	(CDS detail)
type	STS
link
xref	UniSTS:234228
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:145335
definition	standard_name : AU048885

name	(CDS detail)
type	STS
link
xref	UniSTS:185454
definition	standard_name : BB104635

name	(CDS detail)
type	STS
link
xref	UniSTS:207226
definition	standard_name : BE685937

name	(CDS detail)
type	STS
link
xref	UniSTS:215972
definition	standard_name : RH132689

name	(CDS detail)
type	STS
link
xref	UniSTS:207225
definition	standard_name : BE632883

name	(CDS detail)
type	STS
link
xref	UniSTS:128755
definition	standard_name : D1Mit394

name	(CDS detail)
type	STS
link
xref	UniSTS:128788
definition	standard_name : D1Mit422

name	(CDS detail)
type	STS
link
xref	UniSTS:210133
definition	standard_name : RH136138

name	(CDS detail)
type	STS
link
xref	UniSTS:210161
definition	standard_name : RH136166

name	(CDS detail)
type	STS
link
xref	UniSTS:143055
definition	standard_name : F13b

name	(CDS detail)
type	STS
link
xref	UniSTS:498464
definition	standard_name : Cfh

name	(CDS detail)
type	STS
link
xref	UniSTS:128537
definition	standard_name : D1Mit199

name	(CDS detail)
type	STS
link
xref	UniSTS:234229
definition

clone name	MSMg01-131I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233O03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-517F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412B01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-289G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453G07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-545L10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-176N03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-312N19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-517B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388D02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-305J02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-533H12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-124I09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-381G05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-533H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140D04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-409L19
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-138M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247E03
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-232J02.T7 (MSMg01no232_j02.b1)	MSMg01-232J02.TJ (MSMg01no232_j02.g1)
ACC	AG399032	AG399033
length	727	723
length of high quality (start - end)	324 (44 - 367)	295 (73 - 367)
definition	CHROMAT_FILE: MSMg01no232_j02.b1 PHD_FILE: MSMg01no232_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:05 2005	CHROMAT_FILE: MSMg01no232_j02.g1 PHD_FILE: MSMg01no232_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:05 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(140,774,167 - 140,774,486)	(140,932,719 - 140,933,013)
sequence	ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA TTCATGGTGCGCACGGCGTATGGGCTACACTCCACATGAACTAAGTGCAT GTTGACAGTGAAGGGAAGCCTTGTTAACCCTGAACAATCATTCCAATTAT AACTACATGCACACAATCACTGTCACATCAAGTATCCACACTAATTACTT CTAGCCTTTCTGTTGTGCAAGCATTAAAAAGAAAGCCTACAACTGTGTCT ATTCAGTATGAACTGTGGGATCTCCCAAAAGAGAGCGGCTAAATTAAAAA TATATCTATATACATATATAGATAGATATAGATATTAAAATACAAGGATT TGATTTGTGCTTTGAAAGTGTACGCACAGCACAGTTTTACAGGCTTTCCC ACACAACAACACATCGGTACCGGGCATCTTGGCTAAGTATACAAATGCAG AGAGCTGCTCTCTGCACTCTTGGTGCTGCCTGAGGGGGAATGCATGTCCA CTGTTCCATGACTGGAATGAAAGGCGCACTGAGTTTCAAGTCAGATATCC ATGACATTGACATACGACTAGTCTACTGAGTAGGATACATGTTAATATCT TCCCAGTGGCGAGTCGGAGTGCTACGCCTCAGTGATCAGCACGACACACG CAACCCCTTTAGGGTTTCCACAGGTGTAAAGCTGAGGCACCTGCTAAGGC TGTGGGATGTAATTCTACTTCTGCAGG	ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXAGTCTCACTAGCTTTCAAATGATCGTCA CACAGGGAATTTCAGTAAACTTATGCTTGTAAGGCTCTGCACAATAACAG TATCAAATAATAAATTTGCATTAAAGTTCTTAATATAAACATAAATACTA TTATATGAGGATATTTCTCAATATCCATAATTGTAATTTATGGAAAAAAA TGTCCAAAATCACTTTTACAACAAAATAAGTTCTATTTGGCAATTTTAAT TCAAAGTTTTCAAAAAAGGGCATGGTTTTCTAAAGATAATATTTGAATAT AATTTCAAGTAAATATGTATTAATACCAACCATTCTATCTAACTGTACTT TATAAGAGGGGTCTATAAACTCTACAACAACAATAAAATAACCTACAGCT CAGCCACAGAACTTTGAGTAAGAGACTGAGCTAGAGACCACAATGAGCAC TGAGATGTGACAGGGCATTCTGAGCAAAGTGCCCAGGAAGAATGCCAGAA ACATTTCAAACCCCATCTTCCAAAGGAAAAAAGGGTCCCCACCAGGTGGG GACTGAGAATAGGGAAACCCCCTTTATTGGCCAAAAAAAGGGTTAAGAAA AATGACCGGGGGGCCCGGGGTTTAAAAAAACCACAATCCCCTTTATAAAA AAGGGGTTTTATAACCCTCCCAA
quality values	Open. Hide. 9 9 9 9 19 29 39 37 33 32 32 28 27 30 30 30 30 33 30 30 30 34 48 36 36 36 36 36 42 44 53 47 43 43 43 43 43 43 29 29 19 24 24 36 34 47 47 42 42 42 42 50 50 54 54 54 54 59 59 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 59 57 57 68 57 57 57 57 68 68 68 51 68 68 68 68 68 68 68 68 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 59 59 59 59 68 68 68 68 68 50 50 50 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 57 59 59 59 59 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 57 57 54 54 54 54 57 57 59 68 68 68 68 68 59 59 59 59 59 57 50 50 53 53 50 57 57 57 57 57 57 59 59 59 59 59 41 32 24 15 18 14 14 14 19 18 15 10 10 10 10 10 11 12 12 12 12 12 12 13 19 30 36 41 48 50 59 59 59 59 59 59 57 57 57 57 57 57 59 57 48 48 48 57 57 59 59 59 57 57 57 54 54 46 46 42 36 30 28 34 18 26 41 30 30 24 22 17 18 23 22 23 41 59 59 59 57 57 57 59 59 57 57 54 57 57 57 59 59 59 68 57 57 57 57 57 59 59 57 57 57 57 57 57 57 59 59 68 68 68 68 57 68 68 68 57 57 57 54 54 54 59 57 57 57 57 68 68 68 68 68 68 68 59 59 59 57 48 48 48 48 48 54 48 48 57 48 48 48 59 59 59 59 59 59 59 59 59 48 48 48 59 59 53 48 48 47 47 41 41 25 25 9 9 9 27 27 41 41 41 41 41 48 59 48 48 57 48 34 34 23 28 28 35 34 50 50 57 57 59 59 57 59 59 57 57 57 57 54 54 68 54 54 54 54 54 54 44 59 39 42 47 57 57 57 57 54 48 48 43 48 54 57 59 59 59 57 57 57 43 43 43 48 48 43 37 37 28 28 33 37 37 32 32 35 39 39 39 39 37 37 27 30 25 29 20 31 31 34 37 37 37 37 39 43 43 47 48 48 41 47 41 39 39 39 39 37 37 37 37 44 44 44 34 34 23 23 23 28 22 33 27 37 36 36 30 27 30 37 37 43 48 48 47 47 47 47 47 59 31 26 26 39 39 34 34 15 13 6 6 6 7 19 25 47 47 46 46 46 32 32 20 23 20 31 19 17 18 13 13 13 28 28 37 37 41 41 30 30 22 19 19	Open. Hide. 10 13 10 10 9 9 18 12 10 10 10 21 22 47 42 42 48 48 47 47 48 48 48 57 57 50 50 48 53 50 50 50 48 43 42 37 37 37 48 36 32 30 15 15 24 24 42 47 47 47 50 46 46 37 37 37 48 28 36 36 36 41 41 44 59 59 47 47 50 50 50 50 50 50 47 41 47 50 47 47 47 48 48 48 48 48 50 50 50 50 50 57 50 50 50 50 50 50 57 57 57 68 68 57 46 48 48 46 48 48 68 57 57 57 57 57 50 50 52 52 52 57 57 57 57 57 57 59 59 59 59 59 59 52 52 52 57 57 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 57 57 57 57 57 57 59 68 68 68 59 59 57 57 57 59 57 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 57 57 59 59 59 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 57 57 57 57 52 57 57 57 57 57 57 57 57 57 52 52 54 57 57 57 57 57 57 57 57 68 57 57 59 59 59 59 59 50 44 50 50 59 59 57 57 54 57 57 57 59 59 59 59 59 59 59 59 57 54 54 59 59 59 59 59 59 57 57 57 59 59 68 68 59 59 59 59 59 48 57 54 59 59 59 59 46 48 43 59 59 54 54 54 59 59 59 59 59 57 59 59 59 57 57 59 59 59 57 57 57 57 57 57 59 59 48 59 59 32 32 23 28 21 19 15 13 13 24 24 18 12 12 12 12 11 11 11 11 11 12 13 13 30 30 46 47 48 48 59 46 46 46 46 46 57 59 59 59 57 40 40 25 25 25 37 37 47 47 35 35 39 59 59 59 47 47 35 37 37 47 43 41 32 36 39 39 39 37 31 28 32 28 39 39 41 41 31 31 31 37 39 39 37 31 31 35 37 37 30 30 28 27 32 37 30 24 20 19 19 19 34 34 30 28 30 23 18 11 11 9 9 11 15 15 23 14 18 19 25 15 13 10 10 9 10 9 11 9 15 15 21 16 13 14 14 15 15 17 13 9 9 9 10 11 11 11 15 12 14 17 16 16 11 9 8 8 8 8 8 9 9 9 13 11 11 10 11 11 11 9 9 9 10 11 10 9 9 9 8 9 9 10 10 8 8 8 8 8 8 9 10 8 8 8 13 16 22 22 17 10 10 11 8 8 9 8 8 9 9 14 14 14 12 14 14 15 12 11 11 11 16 9 9 9 10 8 8 9 9 9 6 6 6 6 6 6 8 6 6 6 6 6 6 6 6 6 9 9 9 9 9 7 7 7 7 10 12 10 9 9 8 8 8 10 8 8 6 6 6 6 11 12 16 19 11 11 11 12 10 10 8 8 8 8 10 12 11 14 10 10 12 12 12 10 11 12 12 15 10 9 9 9 9 9 11 14 11 14 10 11 11 23 21 29 26 18 17 8 8 8 8 8 8 10 10 12 10 10 9 11 11 7 7 7 7 15 9 10 8 8 8 12 17 28 13 15 9 9 8 8 8 6 6 6 6 9 9 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no232_j02.b1 MSMg01no232_j02.b1 CHROMAT_FILE:
MSMg01no232_j02.b1 PHD_FILE: MSMg01no232_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:05 2005
         (324 letters)



>mm_chr1_140773963_140774686
          Length = 724

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatggtgcgcacggcgtatgggctacactccacatgaactaagtgcatgttgaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatggtgcgcacggcgtatgggctacactccacatgaactaagtgcatgttgaca 264

                                                                       
Query: 65  gtgaagggaagccttgttaaccctgaacaatcattccaattataactacatgcacacaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgaagggaagccttgttaaccctgaacaatcattccaattataactacatgcacacaat 324

                                                                       
Query: 125 cactgtcacatcaagtatccacactaattacttctagcctttctgttgtgcaagcattaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactgtcacatcaagtatccacactaattacttctagcctttctgttgtgcaagcattaa 384

                                                                       
Query: 185 aaagaaagcctacaactgtgtctattcagtatgaactgtgggatctcccaaaagagagcg 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagaaagcctacaactatgtctattcagtatgaactgtgggatctcccaaaagagagcg 444

                                                                       
Query: 245 gctaaattaaaaatatatctatatacatatatagatagatatagatattaaaatacaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctaaattaaaaatatatctatatacatatatagatagatatagatattaaaatacaagg 504

                               
Query: 305 atttgatttgtgctttgaaa 324
           ||||||||||||||||||||
Sbjct: 505 atttgatttgtgctttgaaa 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no232_j02.g1 MSMg01no232_j02.g1 CHROMAT_FILE:
MSMg01no232_j02.g1 PHD_FILE: MSMg01no232_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:05 2005
         (295 letters)



>mm_chr1_140932519_140933213
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctcactagctttcaaatgatcgtcacacagggaatttcagtaaacttatgcttgtaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 495 agtctcactagctttcaaatgatcgtcacacaggaaatttcagtaaacttatgtttgtaa 436

                                                                       
Query: 61  ggctctgcacaataacagtatcaaataataaatttgcattaaagttcttaatataaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggctctgcacaataacagtatcaaataataaatttgcattaaagttcttaatataaacat 376

                                                                       
Query: 121 aaatactattatatgaggatatttctcaatatccataattgtaatttatggaaaaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaatactattatatgaggatatttctcaatatccataattgtaatttatggaaaaaaatg 316

                                                                       
Query: 181 tccaaaatcacttttacaacaaaataagttctatttggcaattttaattcaaagttttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tccaaaatcacttttacaacaaaataagttctatttggcaattttaattcaaagttttca 256

                                                                  
Query: 241 aaaaagggcatggttttctaaagataatatttgaatataatttcaagtaaatatg 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaaaagggcatggttttctaaagataatatttgaatataatttcaagtaaatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information