BAC Information

Click to search

BAC

Clone NameMSMg01-232L04
Chromosome1 (Build37)
Map Location 126,124,680 - 126,125,039
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp10
Downstream geneLOC666998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232L04.T7 (MSMg01no232_l04.b1)MSMg01-232L04.TJ (MSMg01no232_l04.g1)
ACCAG399125AG399126
length721722
length of high quality
(start - end)
324 (46 - 369)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no232_l04.b1 PHD_FILE: MSMg01no232_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:15 2005CHROMAT_FILE: MSMg01no232_l04.g1 PHD_FILE: MSMg01no232_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGACTGAACAAGAAGAAAGAAAATTCTAAGCAAGACATGAGTGT
ATGGGTTAGAAAACCATGATTAATGGTGGAGAGCTTATATTAAATCTAAG
TTTGAAGAAAATTATATAACATAGCGATGGAATCTGGGTTCGGGAGAACA
TTGAAAAGCATAGCAAGCATCAATGGAGTTAATTTGAAGGTGTGGCTTTT
TAAAAGTATTGCTATACACAACTCTACAATTTTTTTGGTGAGTAATTTAC
ATATTGTGATGTCCATCTGGAATCTAGACCAATGCACATCTCAGTGAGCT
GCTTGAAGTAGGACTTACTTTACCCGCTGACCACAGAACATCCTCTTTGA
TAAGGTGGTGCTGCTTATCATCACCCTTCAGAACAGTCTTGGTCCTTTTT
GCTATTGAACTTTTAAACTATATTGATTTTTTGGTTACTTATACATTTGT
TATTAAATTGCGAGTCTACCGATTTTGTTATTTGTTTGGGCTAGTGTTCA
GTAGTAATTCTTATGTATGGTTGGCTACACTAAATAAAATTAATACCACA
ACCATCCTCTTGAAGTAGTCTGTACTGATTCTCTTATGCCCTATACAATT
GTACCTTGAAGGTTCTATGGACTGAAACCCCAGGGGAGGACATGGACTTT
TTACTGATTAGATCCTGGGAG
AATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAAAGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCAGTTAGCGAGAA
TTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGTTTTAATTTCTGCGCCCCACGTATCAGAGTAATA
GTGGCTTCATAAAATGAGTTGGCCACAGTACCTTCTACTTCTATTTTGTG
AAATAGTTTGTGCAGAACTGGAATTATATCTTCTTTGAAGGTCTGATAGA
ACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGTTTGGGAGACTA
TTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTATTTAGATGATC
AACTTGATCCTGATTCAATGTTGGTACCTGGTATCTGTCCAGAAATTTGT
CCATTTCGTCCAGGTTTTCCAGCTTTGTTGAGTATAGCCTTTTGTATAAT
GATCTGATGGTGCTCTGCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_l04.b1 MSMg01no232_l04.b1 CHROMAT_FILE:
MSMg01no232_l04.b1 PHD_FILE: MSMg01no232_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:15 2005
         (324 letters)



>mm_chr1_126124517_126125240
          Length = 724

 Score =  526 bits (272), Expect = e-154
 Identities = 318/360 (88%), Gaps = 41/360 (11%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagactgaacaagaagaaagaaaattctaagcaagacatgagtgtatgggttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gaattctagactgaacaagaagaaagaaaattctaagcaagacatgagtgtatgggttag 223

                                                                       
Query: 65  aaaaccatgattaatggtggagagcttatattaaatctaagtttgaagaaaattatataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aaaaccatgattaatggtggagagcttatattaaatctaagtttgaagaaaattatataa 283

                                                                       
Query: 125 catagcgatggaatctgggttcgggagaacattgaaaagcatagcaagcatcaatggagt 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catagggatggaatctgggttcgggagaacattgaaaagcatagcaagcatcaatggagt 343

                                                                       
Query: 185 taatttgaaggtgtggctttttaaaag--------------------------------- 211
           |||||||||||||||||||||||||||                                 
Sbjct: 344 taatttgaaggtgtggctttttaaaagctttttatgggcttggtatttaattatgggctt 403

                                                                       
Query: 212 --------tattgctatacacaactctacaatttttttggtgagtaatttacatattgtg 263
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tttaaaagtattgctatacacaactctacaatttttttggtgagtaatttacatattgtg 463

                                                                       
Query: 264 atgtccatctggaatctagaccaatgcacatctcagtgagctgcttgaagtaggacttac 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atgtccatctggaatctagaccaatgcacatctcagtgagctgcttgaagtaggacttac 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)