BAC Information

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BAC

Clone NameMSMg01-232L06
Chromosome1 (Build37)
Map Location 155,013,745 - 155,014,012
singlet/doubletsinglet
Overlap geneLamc2
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2
Downstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232L06.T7 (MSMg01no232_l06.b1)MSMg01-232L06.TJ (MSMg01no232_l06.g1)
ACCAG399128AG399129
length715730
length of high quality
(start - end)
272 (43 - 314)130 (127 - 256)
definitionCHROMAT_FILE: MSMg01no232_l06.b1 PHD_FILE: MSMg01no232_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:15 2005CHROMAT_FILE: MSMg01no232_l06.g1 PHD_FILE: MSMg01no232_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTGTAAGCACTGTGTAAACCAGCAGAACAAGTTGGACTCTCATGCAA
TTCTCTAGCAGCTCATGATGTCCACCGTTGAAGAAACACAACAGTTGTCT
CTCAACGGCGTCAATGCTGAGTGGCCGAAACGACCATCTGGACTGGTCCT
CCTCATCCCCACTTGTGTCTTGTATGTCCCTCCCAAAGCCTTTTCAAAGA
AAACCAGCAGCCAGCACTGGCCAACTCTGTGTGTGGTTCTAAATGAAAGT
CACACATGGAAGTAGTTGACTTATTATAGTATCTGAAACACTCAAAACAT
TTTAATCATGTTTTTTTACCCCCCCCCCCGCGCCTTCAAATCCAAAGAAC
TGAAACATTTCTTCCCCCCACTCCCTTATATCTCCTGTGTCTGTGGTTCA
ACTCAACCCCTGGGCTCTGTAGATGCTAGGTAAGCACCCTACCTGCGTGC
TATGTCCTCAGTGCTTTGGGCAATATCACTCTGACGTTTGCATTCTGTTT
CCTTCGTCTATATATGTGGAACAGGTCAGCCTTCTGGTACTCTTACCAGG
ATCCATCTGAGTAACGACCAGCCAGCACCCTTGAATGAGCTCACTTTTCC
TTCTTCTGAAGAAACAGGTTAATTATAGCCCTTAATGGTGAGGAATCTTC
TTCCAATTAAGAGTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCAGGTACGTTGCTACTGATTCGTC
ATTAGCTCTGCATTATGTTTGCACGTGATTTGTCTTCTTATTTTTTCTAC
TTTTTTTTGATATTTTCTTTTTTAAATATCTGGCTTTTTACTATATGTAT
GAGTGTGTTGCTGGATTCGTGTCTGTGTACCACATGCGTACCTGGTGCCC
TCGTAGGTCATAATAGGACAGCAGACTCCTTGGAATTAGAATTAAAAATG
GATTTGATTCACCATGAGGCTGCTGTTAATCGAATCCATTTCTTTTACAA
GAGCAGCAAGTGCTTTTAATCACCCCCCCATCTATCTGTCCAGCCCTGTT
GGCCGTTGTTTCTTACCCCCACCCATGACCATATTTATTACTACATTCTT
TGCCTTTCATCCCTTCTGTGTCTTATGCACTATATCTTTGTTTCTTTTTA
AGACCTAATGTTCGGTTTTTCATTGCGTGTTTTTTCCTTACTGTTGAGTG
CCTGTTCCCTTTCCCATGTTTTTTTTTTCACCCAGCATCTTATTTATCTT
TTACGACTTCTTCCTTCCGCGTATATTCCACCATTGAGGTTTTCTCAAAA
ACTCCTTTTGCCTTTTTGTACCCACCCCCTACCTGTCTTGATTTCTCATT
TTTATTTGCCGCTTCACGCCCCCCACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_l06.b1 MSMg01no232_l06.b1 CHROMAT_FILE:
MSMg01no232_l06.b1 PHD_FILE: MSMg01no232_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:15 2005
         (272 letters)



>mm_chr1_155013541_155014212
          Length = 672

 Score =  495 bits (256), Expect = e-144
 Identities = 265/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctgtaagcactgtgtaaaccagcagaacaagttggactctcatgcaattctct 64
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 205 gaattccctgtaagcactgtgtaaaccaacagaacaagttggactctcatgcaactctct 264

                                                                       
Query: 65  agcagctcatgatgtccaccgttgaagaaacacaacagttgtctctcaacggcgtcaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcagctcatgatgtccaccgttgaagaaacacaacagttgtctctcaacggcgtcaatg 324

                                                                       
Query: 125 ctgagtggccgaaacgaccatctggactggtcctcctcatccccacttgtgtcttgtatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgagtggccgaaacgaccatctggactggtcctcctcatccccacttgtgtcttgtatg 384

                                                                       
Query: 185 tccctcccaaagccttttcaaagaaaaccagcagccagcactggccaactctgtgtgtgg 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccctcccaaagccttgtcaaagaaaaccagcagccagcactggccaactctgtgtgtgg 444

                                       
Query: 245 ttctaaatgaaagtcacacatggaagta 272
           ||||||||||||||||||||||||||||
Sbjct: 445 ttctaaatgaaagtcacacatggaagta 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)