BAC Information

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BAC

Clone NameMSMg01-232L23
Chromosome1 (Build37)
Map Location 29,254,527 - 29,254,818
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232L23.T7 (MSMg01no232_l23.b1)MSMg01-232L23.TJ (MSMg01no232_l23.g1)
ACCAG399157AG399158
length735732
length of high quality
(start - end)
239 (129 - 367)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no232_l23.b1 PHD_FILE: MSMg01no232_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:18 2005CHROMAT_FILE: MSMg01no232_l23.g1 PHD_FILE: MSMg01no232_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGAATCTTGTC
AAATGCTTTTTCTGCATCTATCGAGCTGATCATGTGTTTTTTGTCTTTGA
GTTTGTTTATTTAATGGACTACACTGATGGATTTTCGTATATTAAACCAT
CCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTT
AATATGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAAGATTTTTGCAT
CGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGAATCT
TTCTGTGGTTTAGGTATCTTAGTACCACCCGCGCTTCATAAAATGAGTTG
GGTAGAGTACCTTCTACTTCTACCCCCCGAAATAATAATTTGTGCAGAAC
TGGAATTAGATCTTCTATGAAGGTCTGATAGAACTCTGCACTAAACCCGT
CTGGTCCTGAGCTTTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTA
TTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGACTC
AACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTT
TTCCAGTATTGTTGAGTATAACCTTTTGTACAAGGATATGATGGTGTTTT
GGATTTCTTCACGATCTGTTGTTATGTCTCCCTTT
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCACATCATGAATATATTAG
ATGGCACAGCAATTAAAGACTATAAATATTGTTTATTTCAAGTTTGAATT
TTAAGAATTCCCAAAGAGAATAAGGTAGTAAAGGAGCAATCTTATGAAAA
TACAAGTAAAATATTTTGATATATTTTAGAGAACTGACTAAAGAGTTATA
AAATATAAGCATCAGTCTATTTTGTAAGACCTTATAACACTATAAATAAC
TTAATAAATATTAATGAATAATAAGTTTGTGCAAATACTACTAGAGTGCT
ATAATGTGCAGCTACTATTTTTTTAAAACCCCACCTCCTCAATTTCGCAT
CATGTTTTAAACAAAACTTTGGGCACAGCTTCTTATGAATATAAGAAACA
CAATTTCAAGGTAAATTCTCTGATCTTCCTTCTGGCTTTTACTTTCTTCC
TCCTCTTTGTTTGCAATATTCTCTAATCTTTAGATGTGGGAGTGTTTTTT
AGATGCATCTACTGGGAATGGGATCCATAACCACATTTGGACTTGCTAAA
AAATTCTGTAGTAGTCTTCATAAAGTGGAGAGTAGGAGGCATTGCCCTTC
CCAGGGAGGAGAAGATAAACTCTTTGCCCATTGCCAATTGTTAGGCATCC
AAAAGATATGTACCAGTAGCATTATACAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_l23.g1 MSMg01no232_l23.g1 CHROMAT_FILE:
MSMg01no232_l23.g1 PHD_FILE: MSMg01no232_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:18 2005
         (292 letters)



>mm_chr1_29254327_29255018
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagccacatcatgaatatattagatggcacagcaattaaagactataaatattgtttat 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 atagccacatcatgaatatattagatggcacagcaattaaaggctataaatattgtttat 260

                                                                       
Query: 61  ttcaagtttgaattttaagaattcccaaagagaataaggtagtaaaggagcaatcttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaagtttgaattttaagaattcccaaagagaataaggtagtaaaggagcaatcttatg 320

                                                                       
Query: 121 aaaatacaagtaaaatattttgatatattttagagaactgactaaagagttataaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatacaagtaaaatattttgatatattttagagaactgactaaagagttataaaatat 380

                                                                       
Query: 181 aagcatcagtctattttgtaagaccttataacactataaataacttaataaatattaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcatcagtctattttgtaagaccttataacactataaataacttaataaatattaatg 440

                                                               
Query: 241 aataataagtttgtgcaaatactactagagtgctataatgtgcagctactat 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataataagtttgtgcaaatactactagagtgctataatgtgcagctactat 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)