BAC Information

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BAC

Clone NameMSMg01-232M04
Chromosome1 (Build37)
Map Location 58,714,995 - 58,715,304
singlet/doubletsinglet
Overlap geneAls2cr12
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397
Downstream geneCflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232M04.T7 (MSMg01no232_m04.b1)MSMg01-232M04.TJ (MSMg01no232_m04.g1)
ACCAG399167AG399168
length731730
length of high quality
(start - end)
314 (48 - 361)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no232_m04.b1 PHD_FILE: MSMg01no232_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:19 2005CHROMAT_FILE: MSMg01no232_m04.g1 PHD_FILE: MSMg01no232_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAATATTTCTATCCATTGGAAGAAAGCAAATTGTGAAAAATGA
CAAAAGTACAGAACAACTCAAGAGCTCAGCCTTCCCGTGCGTCTCTCCAG
AAGAGTCCGTAGCTTCCTCCCAGGGCAGTGTCGCTCAGCCCCAGGAGCAG
TTAGTTACCTATGATGCTTGCTTTTTGTTGCTGTTGTGTTCAGGAACGTC
AGACTCATACATGTTGGGACTGGCAGATGAGGACTTCTCAGAAACTTCTG
AAGTTTCCTCATATGTGGTTGTGGTTAACATCTGCCTATAAAAGGAATGA
TGGTCACTATATTATTTTTCCTCCCCGCCCCCAGGCGATGGGGGTATTTG
CTGGCAGGTAGGTAACACAACTTGGATTACATCCAGCTTGAGGAAGCATC
TTCTCTCATCACAGTAATTGGCTTACATTTGGTGAAACGTGGTGTTTGGG
AGATCATATTTCCAATGGAAATTGATGAAATAGGTAACTTATCTTCTAAG
TTGGTGGTTTAGGAAGGTCCTTCAGGGAATGGTGATGGTGACTGGTAACT
AGTCTCAACAGAAGCCAGAATCAGAGCGCTAAAACCCACTGAACTCTGAA
AAACAATCCTCAGTCATGGGACAAAGCAGCTCAGAACCCACTGACAATTT
ATCTGTGTTTTACCCAAAAAACAGACACACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAACCCCATGGGACAAGGAA
TTGTTGAACATGCTCATCAAACTCTGAAAAATTGGCTTTTAAAAACAAAA
CAGGGGGCTGGTGAGATGGCTCAGTGTGTAAGAGCACCCGACTGCTCTTC
TGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT
CCCTAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGTGACAG
TGTACTTACAGATAATAAATAAATAAATAAATCTTTAAAAAACAAAAAAC
AACAAAACAACATAATTAAACACACCACGCGCAGTTATACCCCCCAAGGT
CACCAAAAGCACACCTTGCTTTTGTCCTGTTTGTTTTAAATTTTTTGCAA
ACTGATGTTAAAAGTCAGTCTGCAGTGGATCGCCACTGGCATCCAGTTAC
TTCCAGTTCTTATGCCATGGTGAAATGGTGGGACCCATTAACTAATGTGT
GGAATGGTCCAGACCCCGTTTTAATCTGGGGAAGAGGTTCGGTCTGTGTT
TTTGCACAAAAAGAAGACGGATGGTGATGTCTGCCTGAAAGATTGGTTCA
TCAAGTGGACACAGACTCTGAATCTTCCAGTAAGTACTACTCTAACCTCG
ATGATGGCTAAAAAATCTTTTTTTTAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_m04.b1 MSMg01no232_m04.b1 CHROMAT_FILE:
MSMg01no232_m04.b1 PHD_FILE: MSMg01no232_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:19 2005
         (314 letters)



>mm_chr1_58714791_58715504
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatatttctatccattggaagaaagcaaattgtgaaaaatgacaaaagtacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatatttctatccattggaagaaagcaaattgtgaaaaatgacaaaagtacag 264

                                                                       
Query: 65  aacaactcaagagctcagccttcccgtgcgtctctccagaagagtccgtagcttcctccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaactcaagagctcagccttcccgtgcgtctctccagaagagtccgtagcttcctccc 324

                                                                       
Query: 125 agggcagtgtcgctcagccccaggagcagttagttacctatgatgcttgctttttgttgc 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 agggcagtgtcgctcagccccaggagcagttagttacctacgatgcttgctttttgttgc 384

                                                                       
Query: 185 tgttgtgttcaggaacgtcagactcatacatgttgggactggcagatgaggacttctcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttgtgttcaggaacgtcagactcatacatgttgggactggcagatgaggacttctcag 444

                                                                       
Query: 245 aaacttctgaagtttcctcatatgtggttgtggttaacatctgcctataaaaggaatgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacttctgaagtttcctcatatgtggttgtggttaacatctgcctataaaaggaatgat 504

                     
Query: 305 ggtcactata 314
           ||||||||||
Sbjct: 505 ggtcactata 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)