Query= MSMg01no232_o16.b1 MSMg01no232_o16.b1 CHROMAT_FILE:
MSMg01no232_o16.b1 PHD_FILE: MSMg01no232_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:31 2005
(313 letters)
>mm_chr1_159668505_159669217
Length = 713
Score = 590 bits (305), Expect = e-173
Identities = 308/309 (99%)
Strand = Plus / Minus
Query: 5 gaattccttggagtgggaagttgggaggtagcagatgcaggcgcgcacacagtacatttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattccttggagtgggaagttgggaggtagcagatgcaggcgcgcacacagtacatttg 454
Query: 65 tctgaagcctgtacccgctgcaccagggagggaggcctctgcctccagggctccaggacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctgaagcctgtacccgctgcaccagggagggaggcctctgcctccagggctccaggacc 394
Query: 125 accctcacctggggcttagttcccttccttccttccaggaacagagaagttgtgtctctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 accctcacctggggcttagttcccttccttccttccaggaacagagaagttgtgtctctg 334
Query: 185 tctaaagaagatatagggtgccaaggaggtttctggtatggtaattgggtctacagagct 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 333 tctaaagaagatatagggtgccaaggaggtttccggtatggtaattgggtctacagagct 274
Query: 245 gattgcaccccggttactgatcaagagaacattctcagggagaagagtcgggaagctgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gattgcaccccggttactgatcaagagaacattctcagggagaagagtcgggaagctgag 214
Query: 305 atacgtgat 313
|||||||||
Sbjct: 213 atacgtgat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_o16.g1 MSMg01no232_o16.g1 CHROMAT_FILE:
MSMg01no232_o16.g1 PHD_FILE: MSMg01no232_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:31 2005
(538 letters)
>mm_chr1_159517220_159518156
Length = 937
Score = 971 bits (502), Expect = 0.0
Identities = 526/534 (98%), Gaps = 1/534 (0%)
Strand = Plus / Plus
Query: 1 caagagggagatttgctcttggaattagaagaaatatctatgtctaccgccttctcttct 60
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 201 caagagggagatttgctcttggaattagaagaaatatctatgcctaaagccttctcttct 260
Query: 61 ttgaaccctatttagttggatcagctataatcttctatttcccacgatggattttgcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaccctatttagttggatcagctataatcttctatttcccacgatggattttgcata 320
Query: 121 agaatattcattcaacaaatatttactaagtgtgtattgtggacaaggctcagtgctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatattcattcaacaaatatttactaagtgtgtattgtggacaaggctcagtgctagg 380
Query: 181 tattagatggaaaattgacaatatatctctaggctgtatgagctcataaaataccataac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattagatggaaaattgacaatatatctctaggctgtatgagctcataaaataccataac 440
Query: 241 aaagagacctgatttctgaaagagaactcaatagcaacatcgtctgttgctgtcttcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagagacctgatttctgaaagagaactcaatagcaacatcgtctgttgctgtcttcaga 500
Query: 301 cacatcagaagagggcgtcagattccactatagatggctgtgagccaccatgtggttgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatcagaagagggcgtcagattccactatagatggctgtgagccaccatgtggttgct 560
Query: 361 gggaattgaactcaggacctctagaagaacagtcagtgctcttaacctctgagccatctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaattgaactcaggacctctagaagaacagtcagtgctcttaacctctgagccatctc 620
Query: 421 tccagctccaatagcaacatcttccaagaccttgtggtgctacagaatcgataaagcctg 480
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tccagttccaatagcaacatcttccaagaccttgtggtgttacagaatcgataaagcctg 680
Query: 481 aaggttttgagaggtagaagaatttatttggaattgaatgcgcggtgagaagtg 534
|||||||||||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct: 681 aaggttttgagaggtagaagaacttatttggaattgaatggg-ggtgagaagtg 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space: 489456
Effective search space used: 489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
