BAC Information

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BAC

Clone NameMSMg01-233B09
Chromosome1 (Build37)
Map Location 68,219,967 - 68,255,568
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233B09.T7 (MSMg01no233_b09.b1)MSMg01-233B09.TJ (MSMg01no233_b09.g1)
ACCAG399394AG399395
length704690
length of high quality
(start - end)		316 (45 - 360)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no233_b09.b1 PHD_FILE: MSMg01no233_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:44 2005CHROMAT_FILE: MSMg01no233_b09.g1 PHD_FILE: MSMg01no233_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,255,261 - 68,255,568)(68,219,967 - 68,220,259)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGATCATGGTTCATGCTACTTGCTAAACTTATCACATTAATACAC
AGTCCTAATTAAAGCTTCTGGGCATAAGAGTGGCAAGAACTCAGTGTGTT
CCTGGGTAGACTGAATAGCATTGCTCCATGAACAAAGTCAGTAAGAAGTA
GATACCTACCGTTAGTGACTGGTTGAATTCCCTCATGTGTGGCTTTAGAA
CCATAGGAAAGTTTATTAAGGAAGGGAAAACTACTAAAGGACTAAAGCTT
TAGCAAATGAGTTGTATAACTCACTAAAAGCCATTTTTGTATAAAGAAAA
ATATTATTTATTACTGGCCTCACTCACATGTCTGTTTTTAATCCTTCCTT
CCTGGTAGTAAAATCTGCAACCTGGAACTTTTTTTTTTCTAGTTTAGTAA
GTGTAAGGAAGTATTTTCTTTTGTTCCAGCACACTGCAGACCCTCTTCTT
AAGATCCATGTGGTTGCTCACTGGTCCTGGTTCTGCATTCACCCTTGAAC
TTGTTTTGCCCGAACAAAGGTGGTAAGTTTTCTTTTCACCATTTCAAAGG
GCCCCCATTTTTAACCTTCCCCATATAGTGTAAATACTGTGCTCCCCTCC
GCCTTTTTGAAAATAATAAAAAAATTGTCGGGGGTAATATATCTTCCTCT
CTGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTTACCTCTGCAGGGCACTGAA
TAAAGAAGAAGAAGAAATTAGGAGAAGAGCTACTGGCCTGCATGTAAAGG
CTTTACTGTTGGACTCTACTATTTGGTTCTACTATTTAACTCTAATATTT
GACTTTACTATTTGACTTGCCTCCCAAAATAATGGTGTGGAACTTGATCA
AGTAAGTATACCCATGATATAAACTCTGGTCATAATTACTGAAGGAAGTT
CAAATCATTTCTGCCATGTTTACATTTTAATAGGAACTGGATATTATTGT
TATTAATTGTAACATATTGCTAAAGTACTCATTTTTGTAATGAATATAAC
CTTGGACAATTCTCCACCTACTCTTCTTCTTTCTCCTCCTCCTCTCCTTC
CTCCTCCTAAGAATTTAGTCTTTGTTCAACACCTCCTGACTCCTTTAAGG
GATAATATTGTATTCACTTCATCCAAATTTCTGTTTAGATATCAATAGAT
ATTTGTAAACAGGGGACTATCCCTTCAATTTCTCTTTTTGCTGTTGCTTC
ACTGAGTAGATTTCAATTACTTCCCTTTCTTCCCATTTTTCTCTTCCATG
CTCACTCATTTCCTTCCTTTCTTTCTTGTATCTCTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_b09.b1 MSMg01no233_b09.b1 CHROMAT_FILE:
MSMg01no233_b09.b1 PHD_FILE: MSMg01no233_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:44 2005
         (316 letters)



>mm_chr1_68255057_68255772
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggatcatggttcatgctacttgctaaacttatcacattaatacacagtcctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcaggatcatggttcatgctacttgctaaacttatcacattaatacacagtcctaa 453

                                                                       
Query: 65  ttaaagcttctgggcataagagtggcaagaactcagtgtgttcctgggtagactgaatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttaaagcttctgggcataagagtggcaagaactcagtgtgttcctgggtagactgaatag 393

                                                                       
Query: 125 cattgctccatgaacaaagtcagtaagaagtagatacctaccgttagtgactggttgaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cattgctccatgaacaaagtcagtaagaagtagatacctaccgttagtgactggttgaat 333

                                                                       
Query: 185 tccctcatgtgtggctttagaaccataggaaagtttattaaggaagggaaaactactaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tccctcatgtgtggctttagaaccataggaaagtttattaaggaagggaaaactactaaa 273

                                                                       
Query: 245 ggactaaagctttagcaaatgagttgtataactcactaaaagccatttttgtataaagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggactaaagctttagcaaatgagttgtataactcactaaaagccatttttgtataaagaa 213

                   
Query: 305 aaatatta 312
           ||||||||
Sbjct: 212 aaatatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no233_b09.g1 MSMg01no233_b09.g1 CHROMAT_FILE:
MSMg01no233_b09.g1 PHD_FILE: MSMg01no233_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:44 2005
         (293 letters)



>mm_chr1_68219767_68220459
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttacctctgcagggcactgaataaagaagaagaagaaattaggagaagagctactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttacctctgcagggcactgaataaagaagaagaagaaattaggagaagagctactgg 260

                                                                       
Query: 61  cctgcatgtaaaggctttactgttggactctactatttggttctactatttaactctaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcatgtaaaggctttactgttggactctactatttggttctactatttaactctaat 320

                                                                       
Query: 121 atttgactttactatttgacttgcctcccaaaataatggtgtggaacttgatcaagtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgactttactatttgacttgcctcccaaaataatggtgtggaacttgatcaagtaag 380

                                                                       
Query: 181 tatacccatgatataaactctggtcataattactgaaggaagttcaaatcatttctgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatacccatgatataaactctggtcataattactgaaggaagttcaaatcatttctgcca 440

                                                                
Query: 241 tgtttacattttaataggaactggatattattgttattaattgtaacatattg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttacattttaataggaactggatattattgttattaattgtaacatattg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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