Query= MSMg01no233_c12.b1 MSMg01no233_c12.b1 CHROMAT_FILE:
MSMg01no233_c12.b1 PHD_FILE: MSMg01no233_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:49 2005
(693 letters)
>mm_chr1_187799916_187801005
Length = 1090
Score = 1280 bits (662), Expect = 0.0
Identities = 682/690 (98%), Gaps = 5/690 (0%)
Strand = Plus / Minus
Query: 5 gaattctcttagaaaactgtgtttgatgatttgaagcaaaacacacatatagatcgaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gaattctcttagaaaactgtgtttgatgatttgaagcaaaacacacatatagatcgaatt 831
Query: 65 tcccagaaaatgcatcaggattgaaaaattaactagaaaaaaaaaaaagcacttggtatt 124
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 830 tcccagaaaatgcatcagggttgaaaaattaactag---aaaaaaaaagcacttggtatt 774
Query: 125 gcttaagtatgtaaggctagcctggaatgcttgacaaacc-ccagcccccaccctacagt 183
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 773 gcttaagtatgtaaggctagcctggaatgcttgac-aacctccagcccccaccctacagt 715
Query: 184 gagctatgcattgtcacacactggtgctttgtgtcctttgactcctgatgctagccagtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gagctatgcattgtcacacactggtgctttgtgtcctttgactcctgatgctagccagtt 655
Query: 244 tctccatcctaattgcagttataacatttcttaattcaggactcctaagattttcgggag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctccatcctaattgcagttataacatttcttaattcaggactcctaagattttcgggag 595
Query: 304 tatatacatgtaaaacccaacccattataaatgttatttatcttattaaaatttgatgta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tatatacatgtaaaacccaacccattataaatgttatttatcttattaaaatttgatgta 535
Query: 364 acccattgaacagattgtggcttctacaatttgctcagagtattctgtagctaataactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acccattgaacagattgtggcttctacaatttgctcagagtattctgtagctaataactg 475
Query: 424 tgattctgtgcaccagcaaaatgttagtgaatagaggtcagctcagctaagtttctctga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgattctgtgcaccagcaaaatgttagtgaatagaggtcagctcagctaagtttctctga 415
Query: 484 acctgctttattagtttatttttattggaaagctacaggtcaatacagtatgccagatgc 543
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 accggctttattagtttatttttattggaaagctacaggtcaatacagtatgccagatgc 355
Query: 544 cagcatctctgtttaatggaaatcccaaaccaccttaagctacttatatctcccctctat 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 354 cagcatctctgtttaatggaaatcccaaaccaccttaagctacttacatctcccctctat 295
Query: 604 tactacacagaatcaaccgaagtttgtttaattatttatctgcaatagggatcaggaaca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tactacacagaatcaaccgaagtttgtttaattatttatctgcaatagggatcaggaaca 235
Query: 664 gacccaaccaatcaaaagggtgggacagca 693
||||||||||||||||||||||||||||||
Sbjct: 234 gacccaaccaatcaaaagggtgggacagca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1090
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1080
Effective search space: 737640
Effective search space used: 737640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_c12.g1 MSMg01no233_c12.g1 CHROMAT_FILE:
MSMg01no233_c12.g1 PHD_FILE: MSMg01no233_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:49 2005
(245 letters)
>mm_chr1_187739602_187740246
Length = 645
Score = 397 bits (205), Expect = e-115
Identities = 232/245 (94%), Gaps = 8/245 (3%)
Strand = Plus / Plus
Query: 1 ttcagtttcagaaatgaaaggtagtaaggacgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 60
|||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 209 ttcagtttcagaaatgaaaggtagtaagga-g-------gtgtgtgtgtgtgtgtgtgtg 260
Query: 61 tgtgtgtgtttaaaatatgtctatataacctgattgtttagtggaaagatgctatttttc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tgtgtgtgtttaaaatatgtctatataacctgattgtttagtggagagatgctatttttc 320
Query: 121 tttagttcattcttggaatttttaaatagggcatctcaaaccaaatgaccactgtggcat 180
|||| ||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 321 tttaattcattcttggaatttttaaatagggcatctcagagcagatgaccactgtggcat 380
Query: 181 ttgcccatgtatagactaggtcatcggtacacaattaaatgtcccagtaaacccatttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcccatgtatagactaggtcatcggtacacaattaaatgtcccagtaaacccatttgt 440
Query: 241 tagcg 245
|||||
Sbjct: 441 tagcg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
