Query= MSMg01no233_e16.b1 MSMg01no233_e16.b1 CHROMAT_FILE:
MSMg01no233_e16.b1 PHD_FILE: MSMg01no233_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:58 2005
(320 letters)
>mm_chr1_132802881_132803600
Length = 720
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%)
Strand = Plus / Minus
Query: 5 gaattcagatataagctcttggacccatgtgtagttctacaaataaagttttctttgcat 64
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcagctataagctctttgacccatgtgtagttctacaaataaagttttctttgcat 458
Query: 65 aatatcagcctgaagtgtaaaaacactcccagggagaagcactgttgggggtaagcttga 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatatcagcctgaagtgtaaaaatactcccagggagaagcactgttgggggtaagcttga 398
Query: 125 atctcagggtcaggcaggatcctctggcttcctgggaagaaagatgagtgagaatctggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atctcagggtcaggcaggatcctctggcttcctgggaagaaagatgagtgagaatctggg 338
Query: 185 cttcttcttctatgatccattcccactcagcccatgtcttatttcactgccggctccagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cttcttcttctatgatccattcccactcagcccatgtcttatttcactgccggctccagt 278
Query: 245 actggagtgacagtcctctgagtcctcagtgagtgataggccgaagggcttcattcagac 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 277 actggagtgacagtcctctgagtcctcagtgagtgacaggccgaagggcttcattcagac 218
Query: 305 ttgctgctctcaa 317
|||||||||||||
Sbjct: 217 ttgctgctctcaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_e16.g1 MSMg01no233_e16.g1 CHROMAT_FILE:
MSMg01no233_e16.g1 PHD_FILE: MSMg01no233_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:58 2005
(299 letters)
>mm_chr1_132706356_132707055
Length = 700
Score = 557 bits (288), Expect = e-163
Identities = 297/300 (99%), Gaps = 1/300 (0%)
Strand = Plus / Plus
Query: 1 tttgaagactttattagcatataatctaacttattaagattggggagaatgctgtaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaagactttattagcatataatctaacttattaagattggggagaatgctgtaggat 260
Query: 61 tagtaatttttacaagatttaacatagccttggttttccatgattcttatgctgggattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtaatttttacaagatttaacatagccttggttttccatgattcttatgctgggattt 320
Query: 121 atatatctgggattatgtcattgcttagattttttttt-atcgacagtattcttttggat 179
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 atatatctggggttatgtcattgcttagattttttttttatcgacagtattcttttggat 380
Query: 180 gaagtatttgccatgttcagatgggactgggttgtggtagagctgaggtgcaaaattcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtatttgccatgttcagatgggactgggttgtggtagagctgaggtgcaaaattcag 440
Query: 240 tactagttcctcaattcagcaacacaggatgccagcttcggtctctgatcttctagacta 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactagttcctcaatccagcaacacaggatgccagcttcggtctctgatcttctagacta 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space: 200390
Effective search space used: 200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
