Query= MSMg01no233_f14.b1 MSMg01no233_f14.b1 CHROMAT_FILE:
MSMg01no233_f14.b1 PHD_FILE: MSMg01no233_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:02 2005
(658 letters)
>mm_chr1_29139736_29140793
Length = 1058
Score = 1234 bits (638), Expect = 0.0
Identities = 650/654 (99%)
Strand = Plus / Minus
Query: 5 gaattcactgaatttttaataatggatatactaataagggcacctgtagactacaggtct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattcactgaatttttaataatggatatactaataagggcacctgtagactacaggtct 758
Query: 65 caatcccaaacatgacatgataagtcaaaattctaattactaataggaggttaaagtaat 124
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 757 caatcccaaacatgacatgttaagtcaaaattctaattactaatgggaggttaaagtaat 698
Query: 125 actgaatgtaatcaatcaagttatctttattaatatacagaacacaacatttttttaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 actgaatgtaatcaatcaagttatctttattaatatacagaacacaacatttttttaaga 638
Query: 185 acacatgttctctcaacagactttaaagcaaactactgtctttaaggaagtttgttagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acacatgttctctcaacagactttaaagcaaactactgtctttaaggaagtttgttagca 578
Query: 245 aaatataattagagattataatttaaagattgtattacttactcacaaagccataacagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaatataattagagattataatttaaagattgtattacttactcacaaagccataacagt 518
Query: 305 atttataagacacaatcttagaaaacttacagttagaatgtccatggggtattgttttta 364
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 517 atttataagacacaatcatagaaaacttaaagttagaatgtccatggggtattgttttta 458
Query: 365 tatattttcttaattccaaaaagtaaatttattttatttcaaagttgatacaatataaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatattttcttaattccaaaaagtaaatttattttatttcaaagttgatacaatataaat 398
Query: 425 gatatatacaagtagaaatatgtgtataagataataaatatatcatttatagcattgaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gatatatacaagtagaaatatgtgtataagataataaatatatcatttatagcattgaaa 338
Query: 485 aattgctgttactcaattagtaaagaaataatgagtttcatgatcatatttataatgcta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aattgctgttactcaattagtaaagaaataatgagtttcatgatcatatttataatgcta 278
Query: 545 aatacatcttacattttgagcattgatttaatttgtgtggatattgaaaaatacacagag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatacatcttacattttgagcattgatttaatttgtgtggatattgaaaaatacacagag 218
Query: 605 attaagtgaatacatattaatttatatatttattattgcgtcccgctcgaccgg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 attaagtgaatacatattaatttatatatttattattgcgtcccgctcgaccgg 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_f14.g1 MSMg01no233_f14.g1 CHROMAT_FILE:
MSMg01no233_f14.g1 PHD_FILE: MSMg01no233_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:02 2005
(291 letters)
>mm_chr1_29054700_29055390
Length = 691
Score = 557 bits (288), Expect = e-163
Identities = 291/292 (99%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 1 caaagtgcatcagggtttttatttcctcatgtaaattttactcatttaaaatttttactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtgcatcagggtttttatttcctcatgtaaattttactcatttaaaatttttactt 260
Query: 61 ttgttgctgttgttgttttacaattctgtagcctatcaatgaagcagaacctatatgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttgctgttgttgttttacaattctgtagcctatcaatgaagcagaacctatatgcaa 320
Query: 121 attttcttttcaacgtttttcttacattagtgagaaaaaa-ttttatctaataaaaatat 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 attttcttttcaacgtttttcttacattagtgagaaaaaaattttatctaataaaaatat 380
Query: 180 tttaatgttattttttgatataattcttattcattctgtcttttgtgtttcaataaagtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatgttattttttgatataattcttattcattctgtcttttgtgtttcaataaagtc 440
Query: 240 atcaatacaatagcatggaatgccgaccaatcagataattggcctctgtgcc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaatacaatagcatggaatgccgaccaatcagataattggcctctgtgcc 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
