BAC Information

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BAC

Clone NameMSMg01-233G21
Chromosome1 (Build37)
Map Location 104,257,074 - 104,257,362
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233G21.T7 (MSMg01no233_g21.b1)MSMg01-233G21.TJ (MSMg01no233_g21.g1)
ACCAG399638AG399639
length754739
length of high quality
(start - end)
289 (385 - 673)260 (380 - 639)
definitionCHROMAT_FILE: MSMg01no233_g21.b1 PHD_FILE: MSMg01no233_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:08 2005CHROMAT_FILE: MSMg01no233_g21.g1 PHD_FILE: MSMg01no233_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGATATCGCG
GAATTCATTATAATTTTATCTATAGAAAAAAATCAGTTTCTGATTTCAGT
AACCATATTTCAAGGTCACAATTTTCACCAACAAAAGAATAGAAGAGAAC
ACCTTACCATAAAACATTCCAATGAATAGTGTCATTTACATTCCTAGTAC
TTGATTTTTTAAAGCAAACATTGTATTGCAACCCTACCAATTACCTGTGT
TTTGTAATAGTTACTGTCCCAGTTGCTGTGATAAAACACCTTACATAAGC
TAGATAATGAAGGAAATGTTTGTCTGAATTANTATTTAAGGAGATGAATT
TTATTATGATTGGGAACATATGACAGCACGCAGGGACTACCTGACAGCAG
AATGTGGAAACCAGCTAGATATGTAGGAGAAGGAAAGTAAGCAGGAAGTG
AGCTTGGCTATCAAACTTCATTGACCAGCCTCAGTGATACACTTCATCCA
GCTAGTCTCTACTTCCTTAAAATCACACAAGCTTTCTAAACAGGCGGGAG
ACATTTTATTTTAAAACTATGAAAGGATTATGCTTTCTTTCTAAGCCTGC
AGCAGACAGTTTCTATTCAAATCACAAATGTAGAGAGTCTTGTGCTTTCA
GAAAAAGTACATGGAGCTTATCTGCCAGGANAAGTGAGTGTGGAGAAAAG
ACAAAGTGGTTGTAGGGAATGTTAAGGATGTGAGTGAGCAGAAAGTACCA
CAGT
CGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGACAANCATCATGATCTTTCCAAAACTTTTATCATG
AATGGGTGTTGGATCTTGTCTAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTCCTTGG
TCAGGATTTTTGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATTGANATTCANTTTAGAAATTGGNCTGAAGT
TCTCTATCTTTGTTGTGTCTTTCTGCGGCTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAA
TAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTG
ATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAAC
TTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCA
TTTCGTCCATTTTTTCTTGTTTTGTTGAGCATAGCCTTTTGCAGAAGGAT
CTGATGGTGTTTTGGAATTCTTCAGGATCTGTTGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_g21.b1 MSMg01no233_g21.b1 CHROMAT_FILE:
MSMg01no233_g21.b1 PHD_FILE: MSMg01no233_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:08 2005
         (289 letters)



>mm_chr1_104256713_104257401
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactacctgacagcagaatgtggaaaccagctagatatgtaggagaaggaaagtaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gactacctgacagcagaatgtggaaaccagctagatatgtaggagaaggaaagtaagcag 591

                                                                       
Query: 61  gaagtgagcttggctatcaaacttcattgaccagcctcagtgatacacttcatccagcta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 590 gaagtgagcttggctatcaaacttcattgaccagcctcagtgatacactttatccagcta 531

                                                                       
Query: 121 gtctctacttccttaaaatcacacaagctttctaaacaggcgggagacattttattttaa 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 530 gtctctacttccttaaaatcacacaagctttctaaacaggtgggagacattttattttaa 471

                                                                       
Query: 181 aactatgaaaggattatgctttctttctaagcctgcagcagacagtttctattcaaatca 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aactatgataggattatgctttctttctaagcctgcagcagacagtttctattcaaatca 411

                                                            
Query: 241 caaatgtagagagtcttgtgctttcagaaaaagtacatggagcttatct 289
           |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 caaaggtagagagtcttgtgctttcagaaaaagtacatggagcttatct 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)