BAC Information

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BAC

Clone NameMSMg01-233H06
Chromosome1 (Build37)
Map Location 150,926,605 - 150,926,892
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233H06.T7 (MSMg01no233_h06.b1)MSMg01-233H06.TJ (MSMg01no233_h06.g1)
ACCAG399654AG399655
length709748
length of high quality
(start - end)
---288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no233_h06.b1 PHD_FILE: MSMg01no233_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:09 2005CHROMAT_FILE: MSMg01no233_h06.g1 PHD_FILE: MSMg01no233_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAATTGCGGCGCTAAACGATCNNANTTCGGCAGGGCGCGGNAAAAAGA
NATTTCTAGNAAAGAGCCCGAAACAGAGAGCGAAAGAAGGAGGACGAGTC
TGGTGGACCCCAGAAACACCATGAAAACGCTCCATCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAACTACAGTACCCAAAC
ACATTACCGACACGATGTCCACTATCTCCTATTTAACAAATCGCACTACG
AAGACCTTTTTTTTTTCATCCGAACCGGAGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXX
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCAGCAGAGGTAGACATGGCAGCAG
AAATATCAGAAACATTGCATATCATATCACAAGTACTTAACCAGTAACTT
AACTGCCTTGTCATTTTGCAATGCCTATGCTTTCTTATAGAAAGTAGATA
CAAGTTGGGGATCGCCTGTAGGTCCATGAGACTGTTTATGGCACTTATAT
CTCAGTTCACACCCACATTATCGTATTTCTACAATAAGTAAACCCAACTT
CAACGTATAATGTTCCGTGTCAAAAAGTGCTTTCTACAATGAACCATATC
ATATATAACTAATAATAGGCATTACCCACACCACCAATGATAGGGGTTAA
GATATTGAATAATACTAAATGTTATAGGTATAATATTTAAGCTACTAGAA
CATAATAATTCAAACTTAAAGAAAACTGTGTATGGTGCAGCAGTTTTCCC
ACCATCAGATGTTGGAGTGATGTTTTATACAGTGTTAAGATGTTTCTCTG
TCCTTCTTTGTCTACCCAAGACACATTCTGATTGGTTAATATAAAAAGCC
CATGGCCTAAAAAAAGACAGGATAGTAAGCCAGGACATATGCTGATAAAG
AGAAGAACTATTAAATAGAGTGAGAGGCAGGAGGTTCACTACCAAGACCT
CAGTGGAAGCCAATTGATGAAATTGATGACAGCTAACTATACAGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_h06.g1 MSMg01no233_h06.g1 CHROMAT_FILE:
MSMg01no233_h06.g1 PHD_FILE: MSMg01no233_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:09 2005
         (288 letters)



>mm_chr1_150926405_150927092
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcagcagaggtagacatggcagcagaaatatcagaaacattgcatatcatatcacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catcagcagaggtagacatggcagcagaaatatcagaaacattgcatatcatatcacaag 429

                                                                       
Query: 61  tacttaaccagtaacttaactgccttgtcattttgcaatgcctatgctttcttatagaaa 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tatttaaccagtaacttaactgccttgtcattttgcaatgcctatgctttcttatagaaa 369

                                                                       
Query: 121 gtagatacaagttggggatcgcctgtaggtccatgagactgtttatggcacttatatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtagatacaagttggggatcgcctgtaggtccatgagactgtttatggcacttatatctc 309

                                                                       
Query: 181 agttcacacccacattatcgtatttctacaataagtaaacccaacttcaacgtataatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agttcacacccacattatcgtatttctacaataagtaaacccaacttcaacgtataatgt 249

                                                           
Query: 241 tccgtgtcaaaaagtgctttctacaatgaaccatatcatatataacta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tccgtgtcaaaaagtgctttctacaatgaaccatatcatatataacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)