Query= MSMg01no233_k04.b1 MSMg01no233_k04.b1 CHROMAT_FILE:
MSMg01no233_k04.b1 PHD_FILE: MSMg01no233_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:23 2005
(634 letters)
>mm_chr1_163805005_163806033
Length = 1029
Score = 1091 bits (564), Expect = 0.0
Identities = 616/642 (95%), Gaps = 20/642 (3%)
Strand = Plus / Minus
Query: 4 ggaattcccaaagagccttgagacttggtgactgaaagtgatggcctttgtgttaaagag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggaattcccaaagagccttgagacttggtgactgaaagtgatggcctttgtgttaaagag 611
Query: 64 attttgcttcttatactaaaatctaaacacactttcttatttaccttatgtcttcaaagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 attttgcttcttatactaaaatctaaacacactttcttatttaccttatgtcttcaaagc 551
Query: 124 gccagtaataattccctttttttttttatggatgtgtaatggaatccagaggtgctcaag 183
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 550 gccagtaataattccc---ttttttttatgg--gtgtaatggaatccagaggtgctcaag 496
Query: 184 ttgtagagttgttgctcacatagagtaatatattaatatgggctcaagaaaacacttgtc 243
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgtagagttgttgctcacatagaataatatattaatatgggctcaagaaaacacttgtc 436
Query: 244 tgagaaaatctgactggaaagactgtatttcttgtcattctgaatcctttaaatactcct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgagaaaatctgactggaaagactgtatttcttgtcattctgaatcctttaaatactcct 376
Query: 304 taagagaaactggtacctgaaaccagtgtaggattaggtagcaatttcttagagttggtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taagagaaactggtacctgaaaccagtgtaggattaggtagcaatttcttagagttggtg 316
Query: 364 agcttctcttactagccttttctcccctcactcagaaattatctccagattttgttaccc 423
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 315 agcttctcttactagccttttctcccctcattcagaaattatctccagattttgttaccc 256
Query: 424 acttctcttttgtagattgagtattctatgttcatataataatcagttctag----ta-- 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 255 acttctcttttgtagattgagtattctatgttcatataataatcagttctagggtctacc 196
Query: 478 -atagtaatagtactctattactattactgcagtttagtttgatcttatactgtcatagt 536
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 c--aggact--tactctattactattactgcagtttagtttgatcttatactgtcatagt 140
Query: 537 tgata----gtgtgtgatacagccttctgctttttctcttttcctgcctagagtgctata 592
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 139 tgatagattgtgtgtgatacagccttctgccttttctcttttcctgcctagagtgctata 80
Query: 593 gatttaccttaacagaaaaacaaaatgcatcctatctattca 634
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 79 gatttaccttaacagaaaaccaaaatgcatcctatctattca 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1029
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1019
Effective search space: 635856
Effective search space used: 635856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_k04.g1 MSMg01no233_k04.g1 CHROMAT_FILE:
MSMg01no233_k04.g1 PHD_FILE: MSMg01no233_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:23 2005
(618 letters)
>mm_chr1_163638442_163639459
Length = 1018
Score = 1156 bits (598), Expect = 0.0
Identities = 613/618 (99%)
Strand = Plus / Plus
Query: 1 atgccacagatgaagcagcgaaccactgaaatggtcattgggcaatcacatggttccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgccacagatgaagcagcgaaccactgaaatggtcattgggcaatcacatggttccaat 260
Query: 61 tgtggtctctgttaaatataacaagatgaattgggtcagaggagaagtgacaaaatctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggtctctgttaaatataacaagatgaattgggtcagaggagaagtgacaaaatctag 320
Query: 121 gcaagttgctaaaaaaggaaaaagaagaaatacaggtgcagggctcagtagcctgtgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagttgctaaaaaaggaaaaagaagaaatacaggtgcagggctcagtagcctgtgtcc 380
Query: 181 tgtgtaagggcagggcgggatgagtcacagatatcctttagttaagtgttttaaacactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtaagggcagggcgggatgagtcacagatatcctttagttaagtgttttaaacactc 440
Query: 241 cgtgaatagtactgggaagaagaagcaggtctgggagatgtcagagcatcatttgttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgaatagtactgggaagaagaagcaggtctgggagatgtcagagcatcatttgttctt 500
Query: 301 ttgcaaacatagaattgtctttttaaaaactactatcccatacagcacagatgtcagtaa 360
||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 ttgtaaacatagaattgtctttttaaaaactactatcccatacaggagagatgtcagtaa 560
Query: 361 aagatgcatatgtaaattcagtgccctaaagaaacattagaaccagagataaaaagttga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagatgcatatgtaaattcagtgccctaaagaaacattagaaccagagataaaaagttga 620
Query: 421 gtgtcctcatctggagatggcacttaagaccaaagaattggatcacatcacctaaggata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtcctcatctggagatggcacttaagaccaaagaattggatcacatcacctaaggata 680
Query: 481 gcattaaaagagtgatagtaactttcttcacctgcttctttgatgaattaacagtacata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcattaaaagagtgatagtaactttcttcacctgcttctttgatgaattaacagtacata 740
Query: 541 gtctttggccagtttttcctatttggaattttttccatttctgtcacacagggaattact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 gtctttggccagtttttcctatttggaattttttccatttctgtcacacaggggattact 800
Query: 601 ttaatgctatgaagatca 618
||||||||||||||||||
Sbjct: 801 ttaatgctatgaagatca 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
