Query= MSMg01no233_m05.b1 MSMg01no233_m05.b1 CHROMAT_FILE:
MSMg01no233_m05.b1 PHD_FILE: MSMg01no233_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:32 2005
(317 letters)
>mm_chr1_23294057_23294773
Length = 717
Score = 514 bits (266), Expect = e-150
Identities = 305/326 (93%), Gaps = 13/326 (3%)
Strand = Plus / Plus
Query: 5 gaattccagtcaccgagcactgatgtaatttttatacttgtataaatgttgcaggaatag 64
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattccagtcacagagcactgatgtaatttttatacttgtataaatattgcaggaatag 264
Query: 65 attctctttttaccaattagtactgacaacaaggttaaaaatctttgagccgggcgtggt 124
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 attctctttttaaaaattagtactgacaacaaggttaaaaatctttgagccaggcgtggt 324
Query: 125 ggcgcacacctttaatcccagcactcgggaggcaaaggcaggtggatttctgagttcaag 184
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 325 ggcgcacacctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcaag 384
Query: 185 gccagcctggtctacaaagtgagttccagaacaaccagggctacacagagaaaccctgtc 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccagcctgatctacaaagtgagttccagaacaaccagggctacacagagaaaccctgtc 444
Query: 245 tcaaaaaaaaaaaa-------------cttctttgttactcagcccctcctttgtccttt 291
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaaaaaaaaaaaaaaaaaaaaaaaacttctttgttactcagcccctcctttgtccttt 504
Query: 292 ctctggtcacattacagctttcactt 317
||||||||||||||||||||||||||
Sbjct: 505 ctctggtcacattacagctttcactt 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_m05.g1 MSMg01no233_m05.g1 CHROMAT_FILE:
MSMg01no233_m05.g1 PHD_FILE: MSMg01no233_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:32 2005
(620 letters)
>mm_chr1_23449803_23450819
Length = 1017
Score = 1129 bits (584), Expect = 0.0
Identities = 607/616 (98%), Gaps = 3/616 (0%)
Strand = Plus / Minus
Query: 1 tttctccaaagcccattgtcttttttttttttttaacagatgataaaacccaaacaatag 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 813 tttctccaaagcccattgtc---tttttttttttaacagatgataaaacccaaacaatag 757
Query: 61 gtgaggagcaggtgtgtaaagctctgagtgttgacttgcatttggcaaaactctcaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gtgaggagcaggtgtgtaaagctctgagtgttgacttgcatttggcaaaactctcaccac 697
Query: 121 agagcgaaaccattagggatgctgtcagagagattgatggtgctctgcatttggaaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agagcgaaaccattagggatgctgtcagagagattgatggtgctctgcatttggaaactg 637
Query: 181 tccttgacaaattttataaaacgtgcaattcttctccaaagacacaccatgggttgtagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tccttgacaaattttataaaacgtgcaattcttctccaaagacacaccatgggttgtagc 577
Query: 241 aaaagcacacagcacactcttttgcagagacaacgattcgattaactcaaggaggcacat 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaaagcacacagcatactcttttgcagagacaacgattcgattaactcaaggaggcacat 517
Query: 301 ctggattgaattaagacaggtctgaaataattctactgaaatgcgccactgcaaacagtg 360
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 516 ctggattgaattaagacaggtctgaaataattctactgaaatgtgtcactgcaaacagtg 457
Query: 361 tatagccaagagaaagagagaagtatagaatgggatgaaagaaaggagggtctctaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 456 tatagccaagagaaagagagaagtatagaatgggatgaaagaaaggaggatctctaaata 397
Query: 421 acatcatgaactttttgttattggatttccctttatggggtgggaactttcaatcctgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acatcatgaactttttgttattggatttccctttatggggtgggaactttcaatcctgac 337
Query: 481 aatctctgaagacaaaccaataccaccataagcttcattaaatataaaataaatactgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aatctctgaagacaaaccaataccaccataagcttcattaaatataaaataaatactgac 277
Query: 541 caagagatagactttgtttgggactactgttgtgtttataaaaagataaggagagaagca 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 276 caagagatagactttgtttgggaccactgttgtgtttataaaaagataaggagagaagca 217
Query: 601 atatgttttgatggat 616
|||||||||||||||
Sbjct: 216 gtatgttttgatggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1017
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1007
Effective search space: 614270
Effective search space used: 614270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
