Query= MSMg01no233_p09.b1 MSMg01no233_p09.b1 CHROMAT_FILE:
MSMg01no233_p09.b1 PHD_FILE: MSMg01no233_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:47 2005
(320 letters)
>mm_chr1_19725829_19726548
Length = 720
Score = 588 bits (304), Expect = e-172
Identities = 313/316 (99%), Gaps = 2/316 (0%)
Strand = Plus / Plus
Query: 5 gaattcactttaaatgcatattttagaaaaatcaaaaaaaaaaaagaaaacaaaggaaga 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 207 gaattcactttaaatgcatattttagaaaaatc-aaaaaaaaaaagaaaacaaaggaaga 265
Query: 65 aaataaaaagtaaagcaccttgaatatgcctttctacaatgattttaaatttggcatatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaataaaaagtaaagcaccttgaatatgcctttctacaatgattttaaatttggcatatt 325
Query: 125 cctgtctgatacttttgtatatgtattcttaaaaatagaaaaaaatataaaaatacaatc 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 326 cctgtctgatacttttgtatatgtattcttaaaaatag-aaaaaatataaaaataaaatc 384
Query: 185 aacttttttgtaaaatatgaatttattaaaatatagtttcatagccttcgaatctacaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacttttttgtaaaatatgaatttattaaaatatagtttcatagccttcgaatctacaga 444
Query: 245 gcagtacaattttttacactcaacagaagtaggtatttggcataatgatcttaggcagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagtacaattttttacactcaacagaagtaggtatttggcataatgatcttaggcagag 504
Query: 305 tacagaattctgctca 320
||||||||||||||||
Sbjct: 505 tacagaattctgctca 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_p09.g1 MSMg01no233_p09.g1 CHROMAT_FILE:
MSMg01no233_p09.g1 PHD_FILE: MSMg01no233_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:47 2005
(625 letters)
>mm_chr1_19856096_19857120
Length = 1025
Score = 1172 bits (606), Expect = 0.0
Identities = 618/622 (99%)
Strand = Plus / Minus
Query: 1 cccatgctctgtcattttcagcagaggaaaagaaatgtcacattgaaatgagtgaagcag 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 822 cccatgctctgtcattttcagcagaggaaaagaagtgtcacattgaaatgagtgaagcag 763
Query: 61 agaacaatgttaaggttggtttgtgaggtaggcaacctcttgaattctatggtggtagaa 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 762 agaacaatgttaaggttggtttgtgaggtaggcaacctcttggattctatggtggtagaa 703
Query: 121 actgctatcaaagcaagtatcatgtcctctgccaaggagaacactcccttagttcatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 actgctatcaaagcaagtatcatgtcctctgccaaggagaacactcccttagttcatttc 643
Query: 181 ttcctgacaggagcaggtttgcctctctttgaagtttatgattctaacatagcaacaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttcctgacaggagcaggtttgcctctctttgaagtttatgattctaacatagcaacaggt 583
Query: 241 aaatatttttcttcagtgcttcaggcttttggcattcagaattaaatcaagtcttcgaat 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 582 aaatatttttcttcagtgcttcaggcttttggcattcagaattaaaccaagtcttcgaat 523
Query: 301 aatctaagtttccattgtatgtctacaagaaggctagaagaccagagctcagagtttaga 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 522 aatctaagtttccattgtatgtctacaagaaggctagaagagcagagctcagagtttaga 463
Query: 361 taattatccagataattacccaggcctctaagtgacttttattggtttacataataaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taattatccagataattacccaggcctctaagtgacttttattggtttacataataaacc 403
Query: 421 atttgggaagaaggaggcttttctcttttaattgcctgtaaaacaaaatcactgtattat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atttgggaagaaggaggcttttctcttttaattgcctgtaaaacaaaatcactgtattat 343
Query: 481 caaatcgccttactctttaaaaagattaaataaaaattacttgcaataaatgtgaacaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caaatcgccttactctttaaaaagattaaataaaaattacttgcaataaatgtgaacaca 283
Query: 541 atgaccgggaagttcttgttttgcaagccttcacaccctcaagagaaatgtatgctgctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atgaccgggaagttcttgttttgcaagccttcacaccctcaagagaaatgtatgctgctg 223
Query: 601 ggttaaaatgagccagtttgac 622
||||||||||||||||||||||
Sbjct: 222 ggttaaaatgagccagtttgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
