CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCTATTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCTACCCTCTTTAGTTCCTTATATATATATATATTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACAGTATCTTTTGCCTTGCAGAAGCTTTGCAGT
TTCATGAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGC
TTTTCTATTCAGGAATTTTTCCCCTATGCCCATATCTTCGAGGCTTTTCC
CCACTCTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATATGAAGTTCC
TTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGAT
TAGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCACTTGTTGA
AAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATC
AAGTGGCCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCA
TTGGTCTCCTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAA
TTGCTCTGTCGTAAAACTTTAGGTCAGGGATGGTGATTCCACCAGAGGTT
CTCTTATCCTTGAGAAGAGTT

NCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGCTGGCTGATTCAACTCAGTTGTC
ATGACTCAATCTCTTTTCTAATTGACTAATTCACACTGATTTCTTTCAGC
TTCTGACTGAATTCCTCTGCTTGGAAAAATTGCTTCTAAACTCTGCAAAA
CAAACTTCACCTAACCAACTCCTGAACTCTCTCAACTCCTCTGTGGTGCA
CTACACTCATTCCTGTCTCTTTGAGCTGCTCTCTTATGTTGCTTCTCTTT
CCTCTCTGTTCTCATGAGAGTTAGAAATATCCTATCTCTGACTCATTATC
TCAAGTCTTTCTCTGATTCATTACTTTGTATGCCACACAATTAGGTGTCT
CTTTCAGATCTGGCTGCTTCATTCTACAAACTAACCTTAAATACATTGTT
TGGGACTGTATACTATGTGCACATCCGCATTCTAGTGAAAGCAGTCATAT
TGATCGAATACAAATCTTCTACACAGAAATATGTATAACAATATAGAAAT
TCAGTTAAAAAAAAAAAGAAACCCAATTCTAGAAAAGATAAAAATGTTCT
TACCTTTCCAGAAACGAAGTAAAGCAAAGTAAAAACAGAATGAGATATTC
TCACACAGCTTGCATGATCATTATGAATATATGGAGCAATTTTGGCCAAC
ATAAAAATATTTTATAGC

Query= MSMg01no234_a23.g1 MSMg01no234_a23.g1 CHROMAT_FILE:
MSMg01no234_a23.g1 PHD_FILE: MSMg01no234_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:55 2005
         (619 letters)



>mm_chr1_48129837_48130855
          Length = 1019

 Score = 1114 bits (576), Expect = 0.0
 Identities = 609/620 (98%), Gaps = 2/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctggctgattcaactcagttgtcatgactcaatctcttttctaattgactaattcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tggctggctgattcaactcagttgtcatgactcaatctcttttctaactgactaattcac 260

                                                                       
Query: 61  actgatttctttcagcttctgactgaattcctctgcttggaaaaattgcttctaaactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgatttctttcagcttctgactgaattcctctgcttggaaaaattgcttctaaactct 320

                                                                       
Query: 121 gcaaaacaaacttcacctaaccaactcctgaactctctcaactcctctgtggtgcactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaaacaaacttcacctaaccaactcctgaactctctcaactcctctgtggtgcactac 380

                                                                       
Query: 181 actcattcctgtctctttgagctgctctcttatgttgcttctctttcctctctgttctca 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcattcctgtctctctgagctgctctcttatgttgcttctctttcctctctgttctca 440

                                                                       
Query: 241 tgagagttagaaatatcctatctctgactcattatctcaagtctttctctgattcattac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagagttaggaatatcctatctctgactcattatctcaagtctttctctgattcattac 500

                                                                       
Query: 301 tttgtatgccacacaattaggtgtctctttcagatctggctgcttcattctacaaactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtatgccacacaattaggtgtctctttcagatctggctgcttcattctacaaactaa 560

                                                                       
Query: 361 ccttaaatacattgtttgggactgtatactatgtgcacatccgcattctagtgaaagcag 420
           ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct: 561 ccttaaatacattgtttgggactatatactatgtgcatatctgcattctagtgaaagcag 620

                                                                       
Query: 421 tcatattgatcgaatacaaatcttctacacagaaatatgtataacaatatagaaattcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 tcatattgatcgaatacaaatcttctacacagaaatatgtataacaatatagaaagtcag 680

                                                                       
Query: 481 ttaaaaaaaaaaagaaacccaa-ttctagaaaagataaaaatgttcttacctttccagaa 539
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaaaaaaaaa-gaaacccaaattctagaaaagataaaaatgttcttacctttccagaa 739

                                                                       
Query: 540 acgaagtaaagcaaagtaaaaacagaatgagatattctcacacagcttgcatgatcatta 599
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 740 acgaagtaaagcaaagtaaaaacacaatgagatattctcacacagcttgcatgaacatta 799

                               
Query: 600 tgaatatatggagcaatttt 619
           ||||||||||||||||||||
Sbjct: 800 tgaatatatggagcaatttt 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)