Query= MSMg01no234_b21.b1 MSMg01no234_b21.b1 CHROMAT_FILE:
MSMg01no234_b21.b1 PHD_FILE: MSMg01no234_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:00 2005
(693 letters)
>mm_chr1_150756610_150757701
Length = 1092
Score = 1120 bits (579), Expect = 0.0
Identities = 631/657 (96%), Gaps = 17/657 (2%)
Strand = Plus / Minus
Query: 49 tcctagagaggatcacaacacaaactaagtcatttatcagttttaaacatttaatagcaa 108
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1092 tcctagaggggatcacaacacaaactaagtcattcatcagttttaaacatttaatagcaa 1033
Query: 109 caatttcattttaattatagtatgaaattcaagcttctttgtaaaattaaaatgtgttaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 caatttcattttaattatagtatgaaattcaagcttctttgtaaaattaaaatgtgttaa 973
Query: 169 ctggaaatgttctt-atatcatttccagtaagtatttagtttaaatattatgttccagaa 227
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 ctggaaatgtt-ttgatatcatttccagtaagtatttagtttaaatattatgttccagaa 914
Query: 228 atatgaagcc--------------atatatatatagttcaacataacatctgttatcata 273
|||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 913 atatgaagccatatatatatatatatatatatatagttcaacataacatctgttatcgta 854
Query: 274 tttaaacattataattcatctatgtaacacccaattctttgggaaatttttactttattt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tttaaacattataattcatctatgtaacacccaattctttgggaaatttttactttattt 794
Query: 334 tgaaacttccataaaaatgtggagtatataatgaattatgaacctgttcgtctatcatcc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tgaaacttccataaaaatgtggagtatataatgaattatgaacctgttcgtctatcatcc 734
Query: 394 tctctattttccccagagattcttctgatcatatccattgtttatgtcacagacattttc 453
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 733 tctctattttccccagagattcttctgatcatatccattatttatgtcacagacattttc 674
Query: 454 tattttcctttaatatttatagaagatatctcatatgtggctaatttatcaactccagta 513
||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct: 673 tattttcctttaatatttataaaagatatctcatatgtggataatttaccaactccagta 614
Query: 514 taatttcttaataactcttccctaagggttcatgaagatttttttgttcattctttagta 573
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 613 taatttcttaataactcttccctaagggttcatgaaga-ttttttgttcattctttagta 555
Query: 574 ataattgcatatttgaaattataatacactatttctcccatttacttcttccctctaaat 633
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 554 ataattgcatatttgaaattataatacaccatttctcccatttacttcttccctctaaat 495
Query: 634 actctcacatacctccccccttagaaagcttaggaggcctcagcactagacaaacaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gctctcacatacctccccccttagaaagcttaggaggcctcagcactagacaaacaa 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space: 739006
Effective search space used: 739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_b21.g1 MSMg01no234_b21.g1 CHROMAT_FILE:
MSMg01no234_b21.g1 PHD_FILE: MSMg01no234_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:00 2005
(610 letters)
>mm_chr1_150678148_150679157
Length = 1010
Score = 1125 bits (582), Expect = 0.0
Identities = 603/610 (98%)
Strand = Plus / Plus
Query: 1 gatatgcagacatattttgcatgtagaaccaacatttcttatataatgaaagtaaagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatatgcagacatattttgcatgtagaaccaacatttcttatataatgaaagtaaagaaa 260
Query: 61 ttacatttcacatttcttattaaaataaactcctgtgtgaaagggacagattacttatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacatttcacatttcttattaaaataaactcctgtgtgaaagggacagattacttatgt 320
Query: 121 aatttaattctgtaagagtcctagtttctacacttatgatttttaaaatacttgattctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttaattctgtaagagtcctagtttctacacttatgatttttaaaatacttgattctc 380
Query: 181 tgtgataactgaaaggtgctcttgtatttgacttctgtaagtgatctgtcataagatcat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tgtgataactgaaaggtgctcttgtatttgacttctgtaagtgatctgtcataagaccag 440
Query: 241 aatttgcaacagtaaaacattgcacatataactgaaggactttttatttaaagggtatag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttgtaacagtaaaacattgcacatataactgaaggactttttatttaaagggtatag 500
Query: 301 gccagaaatctcacacatgagtgatgggatactgtggccctggaatactcctcttcctct 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccagaaatctcacacatgagggatgggatactgtggccctggaatactcctcttcctct 560
Query: 361 atctttagagatgagaacctaagtgtcagaattagttcaaaattgagaaataaataatta 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 atctttagagatgagaacctaagtgtcagaattagctcaaaattgagaaataaataatta 620
Query: 421 agtggtaaaaataaatgaataaatagttttggtgtctattttctagtcataaattgccca 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgataaaaataaatgaataaatagttttggtgtctattttctagtcataaattgccca 680
Query: 481 ttgtatttcataatgcttaaattgcatacgaaggccacactttgcaagaaaaaaatagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgtatttcataatgcttaaattgcatacgaaggccacactttgcaagaaaaaaatagat 740
Query: 541 ttaaaaaagttttctaaaaacagttttatttatattcattttatataaatgcaagtttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaaaaagttttctaaaaacagttttatttatattcattttatataaatgcaagtttta 800
Query: 601 catgaatgga 610
|||| |||||
Sbjct: 801 catgcatgga 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
