Query= MSMg01no234_i17.b1 MSMg01no234_i17.b1 CHROMAT_FILE:
MSMg01no234_i17.b1 PHD_FILE: MSMg01no234_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:33 2005
(615 letters)
>mm_chr1_7534845_7535860
Length = 1016
Score = 1135 bits (587), Expect = 0.0
Identities = 602/607 (99%), Gaps = 1/607 (0%)
Strand = Plus / Plus
Query: 10 ttgattccatgttgacttcatgttggaaattgtcacaatcaataaaaaaatctctaaaat 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttgattccatgttgacttcatgttggaaattgtcacaatcaataaaaaaatctctaaaat 269
Query: 70 tcaatacatttcaaaactcatattctaatgacattaacctttaaaagaagagccaagcca 129
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcaatacatttgaaaactcatattctaatgacattaacctttaaaagaagagccaagcca 329
Query: 130 ttgatccagtggtctgtaccatcccagctagcttaggaaaaaaaaatctaagctctataa 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttgatccagtggtctgtaccatcccagctagcttaggaaaaaaaaatctaagctctataa 389
Query: 190 tctgcctttctgaaaagataaggatttttactgctttaataatatatagtatttatttca 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tctgcctttctgaaaagataaggatttttactgctttaataatatatagtatttatttca 449
Query: 250 tgcatattacatgccttgcttttatcagcttatattataagaaaacactgcatttcagaa 309
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 450 tgcatattacatgccttgcttttatcagcttatattacaagaaaatactgcatttcagaa 509
Query: 310 gagtaaaataaagttcattgtaagggagagtcttttctaaactgaaataatatggttata 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gagtaaaataaagttcattgtaagggagagtcttttctaaactgaaataatatggttata 569
Query: 370 tgcaacacataaactgctgagttccagttatgaccagaagttatgagaactgagaggaca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgcaacacataaactgctgagttccagttatgaccagaagttatgagaactgagaggaca 629
Query: 430 cacccatgtcagcagcagctgctcttggtggagtcacacaacatatgcatacactgcatg 489
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 630 cacccatgtcagcagcagctgctcttggaggagtcacacaacatatgcatacactgcatg 689
Query: 490 gcagccaatgcctatgctactttaagcattgaaaatgtattatgcttttgggcttatgga 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gcagccaatgcctatgctactttaagcattgaaaatgtattatgcttttgggcttatgga 749
Query: 550 cttcagatatgaagcttacctgttttccctcattgttctctgtaagcaatcttatatttt 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cttcagatatgaagcttacctgttttccctcattgttctctgtaagcaatcttatatttt 809
Query: 610 cc-tttt 615
|| ||||
Sbjct: 810 ccctttt 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_i17.g1 MSMg01no234_i17.g1 CHROMAT_FILE:
MSMg01no234_i17.g1 PHD_FILE: MSMg01no234_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:33 2005
(232 letters)
>mm_chr1_7658879_7659510
Length = 632
Score = 441 bits (228), Expect = e-128
Identities = 231/232 (99%)
Strand = Plus / Minus
Query: 1 gatggataacttacactaatggccttctgataagctctatcaaaacctataattgtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gatggataacttacactaatggccttctgataagctctatcaaaacctataattgtctct 247
Query: 61 ctccatttcttatctaccatatagacccttcttttcccatccccactgtgatggtttgaa 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctccatttcttatctaccatataaacccttcttttcccatccccactgtgatggtttgaa 187
Query: 121 taggaaagacccccatagactcacatgtgaatgcttggctcatagtgagtgatactatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 taggaaagacccccatagactcacatgtgaatgcttggctcatagtgagtgatactatta 127
Query: 181 ggatgtgtgtggacattgggctttacagacagtcgagctgaggtctgaaccc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ggatgtgtgtggacattgggctttacagacagtcgagctgaggtctgaaccc 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
