BAC Information

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BAC

Clone NameMSMg01-234J07
Chromosome1 (Build37)
Map Location 176,931,301 - 177,039,565
singlet/doubletdoublet
Overlap geneRgs7
Upstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234J07.T7 (MSMg01no234_j07.b1)MSMg01-234J07.TJ (MSMg01no234_j07.g1)
ACCAG400428AG400429
length747745
length of high quality
(start - end)		595 (45 - 639)346 (388 - 733)
definitionCHROMAT_FILE: MSMg01no234_j07.b1 PHD_FILE: MSMg01no234_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:36 2005CHROMAT_FILE: MSMg01no234_j07.g1 PHD_FILE: MSMg01no234_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,038,976 - 177,039,565)(176,931,301 - 176,931,646)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGGAACTGACTGGATATGAAGCCATGGCAAATCAGATGTCAA
GACCAGAGACCTTGTCAATAACAGACCCAATGGGGCCTGAGTTGGAAGCC
TGTTTGGCATACAGAATTAATTTTGAAACTCATTACAATGAAGGTGGAAA
TTCTTGGGCTGGGTAGGAAAGCCTGAGGGGAGGTGAGAAAGGTTTTCCAT
CTGGAAGGTTACAGATTTTTCTCCTACTTTCCTACAGAAACTCTAAAAGA
ACATATTGAAATTTCCTCTGTATCATTTTTTTTCTTCATTTTGATTTAGG
GTTTAGTTATACTTATCTGTATTTGACACCAATATCCACAGTTTTACTAT
AAACCATGACAGTATTGGATTTTGGACTACAATCAGCCAGGTGAGGTCGT
GCATGCCCATGACTTCAGAACTTGGGAGGCTGAGGCAGGAGGATGCCTGT
GTAAGACACTAACTAAAACCTCTCTTCCAAAATGGAGGAGAAGGAGGTTG
GAGTGGAAGAAGGAAACAAAGAGAAGGAAGAAGATAAAGGGAGGGAGGGT
TAAGAAATGGAATAAAGGAGGGAAGGGAAAGGAAGACCCCAAAAAGAATT
TATTTTATTTCTTTAATATAGACATGTAAGATGAGGCAGGAGAGAGTAAC
ATTTTCTCATGAGCTAAATGCTTCAATCATGCACTGCATAAAAAGTC

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTCATTGACAACACAGGTCATGT
TTTATCTTCCATTCACTTGCCCTTGCTCATAGTGCTAGCTTTACTAGTGG
CTTACACAGTAAGTCTTTCATTTTGCCCTCCTGCCTGGTGGGTTTCTCTA
GAGACTACAGGATAGGTTGAAGAGTGAAACTATGTTCAGTGACATTTGAA
ATAGAGATTTATAGAATTTTACCTGTTGGGTACAAATCTTCTGGCCACAT
ATTCAGGATCTAGTAATAAATTCATTAAAGACATATTGTCTTTTGCTGTT
TATCTAGTGATGGCAGCATTCTGCTCCTCAGCCTACATGGGCTGCCATGA
CATACTTTTCACTTTATATTGCTACCATAAATCTAATTTAAAAGCTTCAT
TTACTATCTTACCAATATCAAAAAAATGAAGGACAAAATACCAGTAACTT
CATGAAAAGTATGACTTTGTGAAATCTAATAATACCAAGAAGTGGATGAG
AATATATGATATAATTATAATTATAAATGCCTGGGTTACCCAATCTACTA
ATAAGGAGGCATGCCCATAAGCACAGTTCAGCATGTCTGAATGTCCTCAA
TAAGAAACTTTAGAACTCCTTTTCAAAGTGTGTATTGGGTCACATTTTAT
TCTGAAAATGCTAAGACGTTCAAGGAGGAATGGTTGGGATAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_j07.b1 MSMg01no234_j07.b1 CHROMAT_FILE:
MSMg01no234_j07.b1 PHD_FILE: MSMg01no234_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:36 2005
         (595 letters)



>mm_chr1_177038976_177039970
          Length = 995

 Score = 1102 bits (570), Expect = 0.0
 Identities = 585/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttggaactgactggatatgaagccatggcaaatcagatgtcaagaccagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaattcactttggaactgactggatatgaagccatggcaaatcagatgtcaagaccagag 531

                                                                       
Query: 65  accttgtcaataacagacccaatggggcctgagttggaagcctgtttggcatacagaatt 124
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 accttgtcaataacagaagcaatggggcctgagttggaagcctgtttggcatacagaatt 471

                                                                       
Query: 125 aattttgaaactcattacaatgaaggtggaaattcttgggctgggtaggaaagcctgagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aattttgaaactcattacaatgaaggtggaaattcttgggctgggtaggaaagcctgagg 411

                                                                       
Query: 185 ggaggtgagaaaggttttccatctggaaggttacagatttttctcctactttcctacaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggaggtgagaaaggttttccatctggaaggttacagatttttctcctactttcctacaga 351

                                                                       
Query: 245 aactctaaaagaacatattgaaatttcctctgtatcattttttttcttcattttgattta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aactctaaaagaacatattgaaatttcctctgtatcattttttttcttcattttgattta 291

                                                                       
Query: 305 gggtttagttatacttatctgtatttgacaccaatatccacagttttactataaaccatg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 290 gggtttagttatacttatctgtatttgacaccaatatccacagttttactataaaatatg 231

                                                                       
Query: 365 acagtattggattttggactacaatcagccaggtgaggtcgtgcatgcccatgacttcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 acagtattggattttggactacaatcagccaggtgaggtcgtgcatgcccatgacttcag 171

                                                                       
Query: 425 aacttgggaggctgaggcaggaggatgcctgtgtaagacactaactaaaacctctcttcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aacttgggaggctgaggcaggaggatgcctgtgtaagacactaactaaaacctctcttcc 111

                                                                       
Query: 485 aaaatggaggagaaggaggttggagtggaagaaggaaacaaagagaaggaagaagataaa 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 110 aaaatggaggagaaggaggttggagtggaagaaggaaacaaagagaaggaagaagagaaa 51

                                                             
Query: 545 gggagggagggttaagaaatggaataaaggagggaagggaaaggaagacc 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  gggagggagggttaagaaatggaataaaggagggaagggaaaggaagacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no234_j07.g1 MSMg01no234_j07.g1 CHROMAT_FILE:
MSMg01no234_j07.g1 PHD_FILE: MSMg01no234_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:36 2005
         (346 letters)



>mm_chr1_176931101_176931846
          Length = 746

 Score =  669 bits (346), Expect = 0.0
 Identities = 346/346 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggctgccatgacatacttttcactttatattgctaccataaatctaatttaaaagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggctgccatgacatacttttcactttatattgctaccataaatctaatttaaaagctt 260

                                                                       
Query: 61  catttactatcttaccaatatcaaaaaaatgaaggacaaaataccagtaacttcatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttactatcttaccaatatcaaaaaaatgaaggacaaaataccagtaacttcatgaaa 320

                                                                       
Query: 121 agtatgactttgtgaaatctaataataccaagaagtggatgagaatatatgatataatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatgactttgtgaaatctaataataccaagaagtggatgagaatatatgatataatta 380

                                                                       
Query: 181 taattataaatgcctgggttacccaatctactaataaggaggcatgcccataagcacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattataaatgcctgggttacccaatctactaataaggaggcatgcccataagcacagt 440

                                                                       
Query: 241 tcagcatgtctgaatgtcctcaataagaaactttagaactccttttcaaagtgtgtattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagcatgtctgaatgtcctcaataagaaactttagaactccttttcaaagtgtgtattg 500

                                                         
Query: 301 ggtcacattttattctgaaaatgctaagacgttcaaggaggaatgg 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcacattttattctgaaaatgctaagacgttcaaggaggaatgg 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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