BAC Information

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BAC

Clone NameMSMg01-234P17
Chromosome1 (Build37)
Map Location 125,240,816 - 125,241,113
singlet/doubletsinglet
Overlap geneDpp10
Upstream geneLOC666983
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234P17.T7 (MSMg01no234_p17.b1)MSMg01-234P17.TJ (MSMg01no234_p17.g1)
ACCAG400702AG400703
length742736
length of high quality
(start - end)
---298 (439 - 736)
definitionCHROMAT_FILE: MSMg01no234_p17.b1 PHD_FILE: MSMg01no234_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:10 2005CHROMAT_FILE: MSMg01no234_p17.g1 PHD_FILE: MSMg01no234_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAATGACTTGGAAGAGATGGGGTATGATTATGAGGCAAGAAT
AAGGCAGCATGAACCATGATTGTTCTCGACCTAAAACAGTGGACGAGGAC
TTTGATTATTTTGTTGCTCGTAAATTCTTAATGGCTGATGATATAGGAAG
CGATAAAGGATTAACTCTTCTACCGAGATTGCTCATTTGAGTGATGGTGT
CAAGAGTGTATCAGATCGTGAATGGAGCTTGCGAACAGCTATTTGACATA
TGTGTTCAATCTGGAGATAATGAGTCTTAGAAGTTGAGCTAAACCAGTTA
TGGTGAGGAGACATTCTTTTTTTTGCACGCCCCCCACCAAAGTTAGGTCT
TTGTGACTAATCAGATGGGGCGCACGACAAAAGGAAAACAAAGATGCTAC
TGATTTGGATTTGAGTCACTAGTGAATAGTGATGGATATCAGTGAGTAGG
AACAGAGAGCAACAGTCTCATGGAATTTAAGGTTTGGTATAAGTGTAGAC
ATTTCACAGGCTGTTGGTGTGCTATGATGGGTGACACATTGCACTTTTTT
TTAAGCCAATGAGGTAAATACTCATGTTGCTTGTGTAGATTTCTCTGCCT
TGAAGAGAGATTGAGAAGACTGAGGTAGCAGCTTCTTTTTGGAAAAGGTG
AATAGAAATTGTAGCCATTCCATTTTGTTAAAAAAATATTTN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGATTCTTAGAACAAGACAGG
AAAAAAACAAAGAGCAAGAGTAAAACGCCAATCCATCTAAGGAGATTCTC
GGGCAGGGAGGAAGCCCCTCCTACAGTTCTCTTCCTAAGGTCAGGTGTAC
ACATACTCTGCTTCCTGCTTCATGGGGAGCTGTGTTTCACCACTTTTTAA
ATATGAAAACTTGGGATATAATGAAGCTAAGTAATCTTTAAGACTTAATG
ATAGTGAAAGCTGTAGAATTTAATATTCAAATCCAAAATGGGGGTTTAAT
TTGATTTATTTTGGATAATATCCCCCGCCCCCCCAAAGGAGAAATCAACT
CTGGCAGAAATTAGAATAAATTAAGACAAAAAAAGAACACCATCCTCTCA
ATCATTTGATGTTTATTCACTGAGGTAAAAGTTGAGTCTGAACTAGCTTT
TGGAAAACAGAATTAGTGGAAGGCTGAGCTTAATGTTTGAAATATATTGT
CCTTTAGGCAGACTCTGAGTTTATGGCTCCTCATACTGACCCACAGAAAA
TTAAAGTTGGTGTGCACTTTATTCAACAGCTCAGGTTACTTTGCTCATTC
TTAGCCAGGGTTTGTTTTCCCATTATCAACATTCTTCCACTCACTGAAAC
TTTATATTTGCAATTTTCACTTGCCAGTCATCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_p17.g1 MSMg01no234_p17.g1 CHROMAT_FILE:
MSMg01no234_p17.g1 PHD_FILE: MSMg01no234_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:10 2005
         (298 letters)



>mm_chr1_125240616_125241313
          Length = 698

 Score =  530 bits (274), Expect = e-155
 Identities = 292/298 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatcctctcaatcatttgatgtttattcactgaggtaaaagttgagtctgaactagct 60
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 accatcctctcaatcatttcatgtttattcactgaggtaaaagttgagcctgaactagct 260

                                                                       
Query: 61  tttggaaaacagaattagtggaaggctgagcttaatgtttgaaatatattgtcctttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggaaaacagaattagtggaaggctgagcttaatgtttgaaatatattgtcctttagg 320

                                                                       
Query: 121 cagactctgagtttatggctcctcatactgacccacagaaaattaaagttggtgtgcact 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 cagactctgagtttatggctcctcatactgacccacagaaaattaaagatggtgtgcact 380

                                                                       
Query: 181 ttattcaacagctcaggttactttgctcattcttagccagggtttgttttcccattatca 240
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 381 ttattcaacagctcaggttactttgctcattcttggccagggtttgtttttccattatca 440

                                                                     
Query: 241 acattcttccactcactgaaactttatatttgcaattttcacttgccagtcatcctag 298
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 acattcttccactcactgaaactttatatttgcaactttcacttgccagtcatcctag 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)