BAC Information

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BAC

Clone NameMSMg01-235B05
Chromosome1 (Build37)
Map Location 158,911,300 - 158,970,962
singlet/doubletdoublet
Overlap genenone
Upstream geneTor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik
Downstream gene1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235B05.T7 (MSMg01no235_b05.b1)MSMg01-235B05.TJ (MSMg01no235_b05.g1)
ACCAG400765AG400766
length716718
length of high quality
(start - end)		564 (45 - 608)544 (77 - 620)
definitionCHROMAT_FILE: MSMg01no235_b05.b1 PHD_FILE: MSMg01no235_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:18 2005CHROMAT_FILE: MSMg01no235_b05.g1 PHD_FILE: MSMg01no235_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,911,300 - 158,911,831)(158,970,647 - 158,970,962)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCTACTATATTCCCAGTCTTAATTTTATATTTTTCAAAAGGTTGA
GGGTTTGCTGCAGCAAGGTACTTGTCTTGAAAGTGCAAGGCCAAAATAAA
TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AGAAAGTGCAAGGCCCTGGGTTCTGTCTCTAGCACCAGGTAAAACAAAAA
TTTCTGAGAAATTTGACACAGGATTTTGTTATGTAACACAGTCTAGCTTG
AACGTAGTCCCCCTTATGAGTCTCCATGTGCTAGGATGCGAGGTGTGTAT
AGGGTTAGGAGTAAGTGCCACGAGCCTGGTTGCAGTCATTTCTCCATGGG
CATTGAGGTTGTTCCTACACCGCCTCTTGTGAACAACGCTGCTGGGAGAA
CTGGCATGCATGTGGACTTCCACGCTAAAGTAACCCTTCAATGCAAAATT
TCCTGAATTTGATGTCTGTAACGAGACTGTGTGAAAACGTCTAAGAAAAT
GTGTTATCATATTCAGAGGCAGAGGGGCACAGTATTTGCAGCCTACTTTT
AAATGCATCTGACAAAAAAACCAAGAAAGAGAAAAGGAAATATGAATAAA
ATATTAAAAATTGATGACTCTAAACAATGGGCATACGAGTTCCCTGTCAC
GGTTCTGCAGTCTTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTACCTAAAGAGGGGCTCAACCA
TAAGCCTCCTCTTTCCCAGTTGTTACACACACACACACACACACACACAC
ACAGAGCACGAATATACAAATACAACCCGCTGAGTTCATTTTTGCTGTTT
ATGTGTATACGGCTTCAGGACTGAGGACTTTGCTTTGGATAACCATTGGG
GGATTATCCCTGGGAGATCCTGTCTCCCTCTCTCCGCAGTAATCAGTCCC
TGTGCAGTTTTAAACAGCACATTCTAAGAGTTTTGATTTATAAATGTGTT
AAAAAATATATATATATAGTAGCTGTCTTCAGACACACCAGAAGAGGGCA
TCAGATCTCATTACAGATGGCCGCGAGCCACCATGTGGTTGCTGGGATTT
GAACTCAGGACCTCCGGAAGAGCAGTCGGTGCCACTAAGCCATCTCTCCA
GCTCATAAATGTGTTTTTATGCCCAGTTAGAAAAATAAATGGAGGCAAGC
CACCAACATATGATAGCACTTATGGTAGAATGCAAGTGCAGGTGCTATAA
AGATAGAGATGATGGAGAAGGAAATATGTCCTCTGGATTTGATAGATTCT
AAACAATACGCGGTTGAAGAGACTGTTGCACTGGAGTAAGAAATCCATCT
AGACTGTAACAATGGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_b05.b1 MSMg01no235_b05.b1 CHROMAT_FILE:
MSMg01no235_b05.b1 PHD_FILE: MSMg01no235_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:18 2005
         (564 letters)



>mm_chr1_158911068_158912031
          Length = 964

 Score =  901 bits (466), Expect = 0.0
 Identities = 523/560 (93%), Gaps = 28/560 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccctactatattcccagtcttaattttatatttttcaaaaggttgagggtttgc 64
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 233 gaattcccctactatattcccagtcttaattttatatttttcaaggggttgagggtttgc 292

                                                                       
Query: 65  tgcagcaaggtacttgtcttgaaagtgcaaggccaaaataaataaataaataaataaata 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cgcagcaaggtacttgtcttgaaagtgcaaggccaaaataaataaataaataaataaata 352

                                                                       
Query: 125 aataaataaataaataaataaataaataaataagaaagtgcaaggccctgggttctgtct 184
           |||||                            |||||||||||||||||||||||||||
Sbjct: 353 aataa----------------------------gaaagtgcaaggccctgggttctgtct 384

                                                                       
Query: 185 ctagcaccaggtaaaacaaaaatttctgagaaatttgacacaggattttgttatgtaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagcaccaggtaaaacaaaaatttctgagaaatttgacacaggattttgttatgtaaca 444

                                                                       
Query: 245 cagtctagcttgaacgtagtcccccttatgagtctccatgtgctaggatgcgaggtgtgt 304
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 cagtctagcttgaacatagtcccccttatgagtctccgtgtgctaggatgcgaggtgtgt 504

                                                                       
Query: 305 atagggttaggagtaagtgccacgagcctggttgcagtcatttctccatgggcattgagg 364
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atagggttaggagtaaatgccacgagcctggttgcagtcatttctccatgggcattgagg 564

                                                                       
Query: 365 ttgttcctacaccgcctcttgtgaacaacgctgctgggagaactggcatgcatgtggact 424
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgttcctacactgtctcttgtgaacaacgctgctgggagaactggcatgcatgtggact 624

                                                                       
Query: 425 tccacgctaaagtaacccttcaatgcaaaatttcctgaatttgatgtctgtaacgagact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccacgctaaagtaacccttcaatgcaaaatttcctgaatttgatgtctgtaacgagact 684

                                                                       
Query: 485 gtgtgaaaacgtctaagaaaatgtgttatcatattcagaggcagaggggcacagtatttg 544
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgtgaaaacgtctaagaaaatatgttatcatattcagaggcagaggggcacagtatttg 744

                               
Query: 545 cagcctacttttaaatgcat 564
           ||||||||||||||||||||
Sbjct: 745 cagcctacttttaaatgcat 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no235_b05.g1 MSMg01no235_b05.g1 CHROMAT_FILE:
MSMg01no235_b05.g1 PHD_FILE: MSMg01no235_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:18 2005
         (544 letters)



>mm_chr1_158970019_158970962
          Length = 944

 Score =  557 bits (288), Expect = e-163
 Identities = 307/316 (97%), Gaps = 5/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 234 ttaaacagcacattctaagagttttgatttataaatgtgttaaaaa-----atatatata 288
           ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||
Sbjct: 944 ttaaacagcacattctaagagttttgatttataaatgtgttaaaaaaatatatatatata 885

                                                                       
Query: 289 tatagtagctgtcttcagacacaccagaagagggcatcagatctcattacagatggccgc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | 
Sbjct: 884 tatagtagctgtcttcagacacaccagaagagggcatcagatctcattacagatggttgt 825

                                                                       
Query: 349 gagccaccatgtggttgctgggatttgaactcaggacctccggaagagcagtcggtgcca 408
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gagccaccatgtggttgatgggatttgaactcaggacctccggaagagcagtcggtgcca 765

                                                                       
Query: 409 ctaagccatctctccagctcataaatgtgtttttatgcccagttagaaaaataaatggag 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctaagccatctctccagctcataaatgtgtttttatgcccagttagaaaaataaatggag 705

                                                                       
Query: 469 gcaagccaccaacatatgatagcacttatggtagaatgcaagtgcaggtgctataaagat 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gcaagccaccaacatatgatagcacttatggtagaatgcaagtgcaggtgctataaagat 645

                           
Query: 529 agagatgatggagaag 544
           ||||||||||||||||
Sbjct: 644 agagatgatggagaag 629



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 49  acacacacacacacacacacacacacaca 77
           |||||||||||||||||||||||||||||
Sbjct: 188 acacacacacacacacacacacacacaca 216



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 49  acacacacacacacacacacacacacaca 77
           |||||||||||||||||||||||||||||
Sbjct: 190 acacacacacacacacacacacacacaca 218



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 49  acacacacacacacacacacacacacaca 77
           |||||||||||||||||||||||||||||
Sbjct: 192 acacacacacacacacacacacacacaca 220



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 49  acacacacacacacacacacacacacaca 77
           |||||||||||||||||||||||||||||
Sbjct: 194 acacacacacacacacacacacacacaca 222



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 49  acacacacacacacacacacacacacaca 77
           |||||||||||||||||||||||||||||
Sbjct: 196 acacacacacacacacacacacacacaca 224



 Score = 56.8 bits (29), Expect = 4e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 49  acacacacacacacacacacacacacaca 77
           |||||||||||||||||||||||||||||
Sbjct: 198 acacacacacacacacacacacacacaca 226



 Score = 54.9 bits (28), Expect = 2e-11
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 49  acacacacacacacacacacacacacac 76
           ||||||||||||||||||||||||||||
Sbjct: 200 acacacacacacacacacacacacacac 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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