BAC Information

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BAC

Clone NameMSMg01-235F18
Chromosome1 (Build37)
Map Location 96,918,111 - 96,918,397
singlet/doubletsinglet
Overlap genenone
Upstream geneNeu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235F18.T7 (MSMg01no235_f18.b1)MSMg01-235F18.TJ (MSMg01no235_f18.g1)
ACCAG400956AG400957
length698698
length of high quality
(start - end)
303 (66 - 368)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no235_f18.b1 PHD_FILE: MSMg01no235_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:40 2005CHROMAT_FILE: MSMg01no235_f18.g1 PHD_FILE: MSMg01no235_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGAATACCAACCAAACAGGTGATGGAATTGAATAAAACCATCCA
AGACCTAAGAAGGGAAGTACACACAATAAAGAAAACCCAAAGTGAGGCAA
CACTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCGAGC
ATCAGCAACAGAATACAAGAGATGGGAGAGAGAATCTCAGGTGCAGAAGA
TTACGTAGAGAACATCGGCACAACAATCAAAGAAAATAGAAAATGCAAAA
ACATCCTAACTCAAAACACCCAGGAAATCCAGGACACAATGAGAACACCA
AACCTACAAATAATAGGAGTGCATCGAGAATGAAGAATTTCAACTCAAAG
GATCAGCAAACATCTTCCACAAAATTATTGAAGAAAACTTCCCAAATCTA
AAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACCCCAAATAG
ACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAATCAGAACAACAA
ATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAA
GTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGA
GACTATGAGAGCCAGAGAAGCTTGTACAGATGTTATACAGACACTAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCAAAAGCACTAAGCACTCCT
AATCACTGAGCCATCTCATTAGGCTATGTTTTAAATATAATTCATTTAAA
GATTTGATACTTTTCAAAAATTATTATTTGTGGTATAATTTTAAAATATA
TACTTGAATATTTGATGATTTGATGAGCTGAAAAAGTACATTTTAGAGAT
ACAGAAAAGGGCAGTTAAGTATATCAAGGACCATTCAGTGACTAGAGAGA
TGACTTGGTGGTTAAGAGTTCTGGCTGCTCTTACAGAAGATACAGATTTG
ATTCCCATCATTCTCATGGTGCCTCACCACTCTCTTGAACTCCAGTTACA
GGGAGTCAGATGCTAGCCTTACACCCCATGGACACCAAACTTGCATTAGA
TAAATAAACACATGCAGGAACAACACTAATGAACATAAAATAAAATAATG
TGTTTTTTAAAAGAACAAAACCAATCTGAAGTATTTACATTTAGTCAGGA
AAGAACAAGCAGAGAATTTCCTAAGTCTTATTGTCCTATAGGTCTCTCTC
ATCCTGTCACCTGTGATATCTGCGCATCTATTGTTTCTGTTATACTTAAG
CAGGCAACCGAAATCTTACTTCAGATCTTATTCTAAGGATAATATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_f18.g1 MSMg01no235_f18.g1 CHROMAT_FILE:
MSMg01no235_f18.g1 PHD_FILE: MSMg01no235_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:40 2005
         (287 letters)



>mm_chr1_96917911_96918597
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcaaaagcactaagcactcctaatcactgagccatctcattaggctatgttttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcaaaagcactaagcactcctaatcactgagccatctcattaggctatgttttaaat 260

                                                                       
Query: 61  ataattcatttaaagatttgatacttttcaaaaattattatttgtggtataattttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ataattcatttaaagatttgatacttttcaaaaattattatttgtggtataattttaaag 320

                                                                       
Query: 121 tatatacttgaatatttgatgatttgatgagctgaaaaagtacattttagagatacagaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tatatacttgaatatttgatgatttgatgagctgaaaaaatacattttagagatacagaa 380

                                                                       
Query: 181 aagggcagttaagtatatcaaggaccattcagtgactagagagatgacttggtggttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggcagttaagtatatcaaggaccattcagtgactagagagatgacttggtggttaag 440

                                                          
Query: 241 agttctggctgctcttacagaagatacagatttgattcccatcattc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttctggctgctcttacagaagatacagatttgattcccatcattc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)