BAC Information

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BAC

Clone NameMSMg01-235H04
Chromosome1 (Build37)
Map Location 85,279,240 - 85,279,534
singlet/doubletsinglet
Overlap genenone
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235H04.T7 (MSMg01no235_h04.b1)MSMg01-235H04.TJ (MSMg01no235_h04.g1)
ACCAG401016AG401017
length728738
length of high quality
(start - end)
517 (46 - 562)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no235_h04.b1 PHD_FILE: MSMg01no235_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:47 2005CHROMAT_FILE: MSMg01no235_h04.g1 PHD_FILE: MSMg01no235_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCAAGATTGCAAAAGCTAAGTCACTCCCTTACACAGGAATTTAC
CATCGCTTAGGAAGAAGGAAGTTTCAGACCAAAGGAGAAACCAGAATAGA
TACTATAGCAGAGTTACACCCATACACACGTATTTACAATGGCCTAAGGG
GAAGGTGGACTATACAAGAGACTAAAATAGGAACTGTGGCAAGGACGCGA
AGCCCTTGACCCTGGCTTCTAAGATTAGTGAATTTTAGGTGGAGCCCTTG
TTGATTCCAGCTGTTATCAATGTATTCTATCCTGGGTGGTTCCCGTTAGA
CCTTTTGCGTTTGCATTCCTCTGCTTTATGTAAGATTCCAGTTACCTCAG
TTGTACCTTGCGAATACGCCATCCAACTTCCTTATTGTCCTCTGCATAAA
AAGTCTGATGCTCAGTTGTAAAATTACATTCAGATTCCACACAAACTCTC
CTGCGTGTGTGTCTGTCTGTCATCATCCACGCTTTGCCCACCCGCGTCGA
GAGACCCCGTTCCACGCAGACATAGGGACCCACAAGGTCTGCGGCACTCT
CCAGCCCTGACCATCTTGCTATTGTTACCTATGCACCTGCTAACAGGCGA
TACTTCACGGAATTTGGCTTGCTTTTGATGCAATAAGAAAAACAGGGGCT
TGGAACCCTTACCAAATACAAAGGTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAATAAAAAAGAATGACAGCT
CTATGTGACTATAAAAGACTTTGTTCTCTTTTCTTCTTAGCAAGAAGAAA
AAAACGTCCGAACTGGTCAAATTCCAAAAGAAGACTGCAGAAAAAAAAGC
CCCGTCAAGATGAGATGAAGGGTAAGGGGATGCTGGAGGAGACTCCAGCA
AGGGGGTACAGGAGGAGGCTTCAGCAAAGGCTGTAGATCTGATGGAGTTT
GTTCTGAACTCACTGGATAGGCAGGCACACAGGAGTTCTGGTCAGCACAG
CGAACTGGCTTTAAATTTCACCAGACCTGCTTTGCCACTGAGTAAATGGT
GAACTGGAACATGTTGGAACCCTGTTCTGAGGTTACACAGCCCAAGGTGA
AGGGTGCAGAGTGTCAGGTTTCCTCTTTATTTATGCACACTAGGATGGAA
ACCATCCTTCCTAACTAAAGGGAGAGTAAATAAACTTTGCTACTTTGAGA
TAAGGTACAGAAGAGGCTGGGTCCTATCCCTGACAGGCAGTTCAGAGAAA
AAGCCCCCAGAAAAGCTTCAGACAGGTGTTCTCATGTCAGTGGATGCATC
TGTCCTTGGGGGAGGCTGCTTCCAAAGTCCCCGAAAGGAAAAAAGTGTTG
TGTTCTTCCCTTTCCTCTAATGAAGGGCCACTTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_h04.g1 MSMg01no235_h04.g1 CHROMAT_FILE:
MSMg01no235_h04.g1 PHD_FILE: MSMg01no235_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:47 2005
         (295 letters)



>mm_chr1_85279040_85279734
          Length = 695

 Score =  478 bits (247), Expect = e-139
 Identities = 283/295 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaataaaaaagaatgacagctctatgtgactataaaagactttgttctcttttcttc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttaaataaaaaagactgacagctctatgtgactataaaagactttgttttcttttcttc 260

                                                                       
Query: 61  ttagcaagaagaaaaaaacgtccgaactggtcaaattccaaaagaagactgcagaaaaaa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ttagcaagaagaaaaaaacatccgaactggtcaaattccaaaagaagacagcagaaaaaa 320

                                                                       
Query: 121 aagccccgtcaagatgagatgaagggtaaggggatgctggaggagactccagcaaggggg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccccgtcaagatgagatgatgggtaaggggatgctggaggagactccagcaaggggg 380

                                                                       
Query: 181 tacaggaggaggcttcagcaaaggctgtagatctgatggagtttgttctgaactcactgg 240
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||  
Sbjct: 381 tacaggaggaggattcagcaaaggctgtagatctgatggagttcgttctgaactcactat 440

                                                                  
Query: 241 ataggcaggcacacaggagttctggtcagcacagcgaactggctttaaatttcac 295
           ||||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 441 ataggcaggcacacaagatttcttgtcagcacagcgaactggctttaaatttcac 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)