BAC Information

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BAC

Clone NameMSMg01-235I21
Chromosome1 (Build37)
Map Location 161,255,255 - 161,255,473
singlet/doubletsinglet
Overlap geneRfwd2
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
Downstream geneEG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235I21.T7 (MSMg01no235_i21.b1)MSMg01-235I21.TJ (MSMg01no235_i21.g1)
ACCAG401092AG401093
length718725
length of high quality
(start - end)
313 (45 - 357)219 (434 - 652)
definitionCHROMAT_FILE: MSMg01no235_i21.b1 PHD_FILE: MSMg01no235_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:55 2005CHROMAT_FILE: MSMg01no235_i21.g1 PHD_FILE: MSMg01no235_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GAATACCCAAGATATAAGATACAATTTGTGAAACACATGAAACTCAAGAA
GAATGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACA
AAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAA
GGATGGGCCATCTAGAGACTGCCATATCTGGGGATCCATCCCATAATCAA
CCTCCAAATGCTGACTCCATTGCATATACTAGCAAGATTTTGCTGAAAGG
ACCCTGATATATCTGTCTCCCCACCCACACCATGCTGGGGCCTAGCAAAC
ACAGAAGTGGATGCTCACAGCCAACTAGATATTGGATGGATCACAGGGCC
CCCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAA
CCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCAGAGCTCA
TGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCAGTAG
AAAGAGAGGTCCATTGGTTGTGCAAACTTTATATGCCACAGTACAGGTGA
ACGCCAGGGCCAAGAAGTGGGAGTGCGTGGGTACAGGAGTTGTTGTCGCC
CTTACCTTTTTTTTCTGT
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCACAAAATTCTCTAAGGGAGATAAGGAACCAAGTTA
AAAAAATAAGGAAGCCTGTACCCAGAAATTACATATGGATTTACTAGATT
ATGAGAGGAATAGACAAAATATGGAACTACCCCTAGTGTTAGAAAGGTTG
TATAGTTTGACAACAAATTGTTCACATCACTGACATTTTACTACTTTAAA
GAGTTTTACAAGGGACATTTGCTGGGGAGAAGCAGACACACTTAAAAAGT
TCTCTTTAAAATAGATTTTTTCTTATAACTGGTTTAGGTTATTATAAAAA
TCAAGATTTCATTTTTTCGCCATACTNACCCCACTGCTACACTGAAGGTG
GACTTGTATAGTANCACACTGAAATACATAATCAAATAAGTTATTTTTTC
TCTCTACTGCACCAAATATTACTTCTTCAGGACAAGTAGTGACAGAAACC
AAATTTGAAGTTCAAATGTTATTAAATTATAAGCATAACTTAAGAGGGCC
TAACAAAAAGTAATATTTATAAGTAATATAAAAATGAACAAAGCAGGTAA
GATACACGTATTTCAATGAAAGACATGCAAATCTGTTGCTATTTGAGAAA
GTAATCCAAGGTCCTTTTTTTTTTTTTTTGCATAAACTACATCATCAATG
ATAAGACCTCTGTATCAAGCTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_i21.g1 MSMg01no235_i21.g1 CHROMAT_FILE:
MSMg01no235_i21.g1 PHD_FILE: MSMg01no235_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:55 2005
         (219 letters)



>mm_chr1_161255055_161255673
          Length = 619

 Score =  408 bits (211), Expect = e-118
 Identities = 217/219 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataagttattttttctctctactgcaccaaatattacttcttcaggacaagtagtgac 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 419 aaataagttattttttctctctattgcaccaaatattacttcttcaggacaagtagtgcc 360

                                                                       
Query: 61  agaaaccaaatttgaagttcaaatgttattaaattataagcataacttaagagggcctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agaaaccaaatttgaagttcaaatgttattaaattataagcataacttaagagggcctaa 300

                                                                       
Query: 121 caaaaagtaatatttataagtaatataaaaatgaacaaagcaggtaagatacacgtattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 caaaaagtaatatttataagtaatataaaaatgaacaaagcaggtaagatacacgtattt 240

                                                  
Query: 181 caatgaaagacatgcaaatctgttgctatttgagaaagt 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 caatgaaagacatgcaaatctgttgctatttgagaaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)