BAC Information

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BAC

Clone NameMSMg01-235J23
Chromosome1 (Build37)1 (Build37)
Map Location 175,348,734 - 175,349,386175,603,085 - 175,603,376
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235J23.T7 (MSMg01no235_j23.b1)MSMg01-235J23.TJ (MSMg01no235_j23.g1)
ACCAG401140AG401141
length714716
length of high quality
(start - end)		657 (46 - 702)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no235_j23.b1 PHD_FILE: MSMg01no235_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:00 2005CHROMAT_FILE: MSMg01no235_j23.g1 PHD_FILE: MSMg01no235_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:00 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(175,348,734 - 175,349,386)(175,603,085 - 175,603,376)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACGAGAAGACCCAATACCTACAGTTAGAAAAAAACAGCATTAA
ACGGGATGCTTACGATACTCAGCAAAAACCAAACCAGGAAGTTAAGGCAG
TTAAGTTTCTCTCCATGGCTGACCTTCACACTGTAGACCTGTATACATCA
CAGTTAAAACATGTTGGAAATGATTGACCTAGTTTTTAAGAAGGTCATAT
TTTTATTCTTGAGCTGTTTTGTCCTCCTTGTAACAGAGATGGAAAACCAG
ACATCCCCAGACAAGAAGCCCTGGAGGACACTGTAAGACAAATATTCTCT
GAAGTAGCAGGAGGATAGAACCAGCCTCTCCCTGAGCAAACAATGCATAC
CAATTTACAAGTGTAAAGCGCACCACAGTCACTAGGGCAAGGTTGGGTAA
TGGAAGCTGTGTGAGGGCAGCCTGTCAATCAAGAGATCTGATTATGCAGA
GCCCACCCTTTTTTGTGTGTTGATGTTGAAATCAAAGAAAACCAACCACC
AGTAAGTGAGTGGGTGGTGTGCATTGGGCTGGGCTTGTCCCTTAGGCTAT
GAACTCCCTGGTAAAGCAGGAAATAACTTTTGTGGAGTTCCCTATATCTA
AAATACCTCTGGTTGAGACCTCACAGCTGGAGGAGAAACTCTGCTGAGGC
TTGTAAAAAGGAAA

AGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGCCAGAAAAGTGCAGCAGG
ACAAGCATTATTTCAGTCCATAATCTCCATCAAAGCTCGAGGTTTCCCAC
TGACTCCCAGGCCCCAGGTTTCCCTGTGCTTACCAGTGAATAATGTAGAG
ACACTGAGGAAGCATTAACTTCACCATTGAAGGAGGACAGCTTAGTTCTA
TAATCAAGAGGGAGGTGGATAATGCCAAATGCCTTTCTAGCTATTTGAGG
TTGCAGCTTGGAGTTGTGTGTTTGTAACATTATGCTGTGGCAAGTCTAGG
TCTTGGGAGCTACTAATGTATGCATACACGCTACCGGAATGACTTAAACC
AGGAGTTGTTTCATCTCAGACCCTCCTTGAAACTCATTCACATGCAGCTG
GCAACTGACACAGCAAAGATCTCCTGACACTGAGTCTGAGCAGAAAAGAA
AGAAGAGACTGGGTGACTTGGCTTTTTTTGGTCTAAGTTTTCACCTTCAT
TCAAAGGAATGAAGGTTCCTAGGGATCCTTTTGCAAGCCTGTAGGACATG
AGGATTATAAATCTAAATCTTGTACCTATGAAGATTTGCAAGAAACATCC
TGAGTGTAACTAGCTCTCTTTGACTTTTTTGGTAATTGTTTACAGGAAGG
AAACTCTTGAGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_j23.b1 MSMg01no235_j23.b1 CHROMAT_FILE:
MSMg01no235_j23.b1 PHD_FILE: MSMg01no235_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:00 2005
         (657 letters)



>mm_chr1_175348530_175349586
          Length = 1057

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaacgagaagacccaatacctacagttagaaaaaaacagcattaaacgggatgc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacgagaagaaccaatacctacagttagaaaaaaacagcattaaacgggatgc 264

                                                                       
Query: 65  ttacgatactcagcaaaaaccaaaccaggaagttaaggcagttaagtttctctccatggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttacgatactcagcaaaaaccaaaccaggaagttaaggcagttaagtttctctccatggc 324

                                                                       
Query: 125 tgaccttcacactgtagacctgtatacatcacagttaaaacatgttggaaatgattgacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaccttcacactgtagacctgtatacatcacagttaaaacatgttggaaatgattgacc 384

                                                                       
Query: 185 tagtttttaagaaggtcatatttttattcttgagctgttttgtcctccttgtaacagaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtttttaagaaggtcatatttttattcttgagctgttttgtcctccttgtaacagaga 444

                                                                       
Query: 245 tggaaaaccagacatccccagacaagaagccctggaggacactgtaagacaaatattctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggaaaaccagacatccccagacaagaagccctggaggacactgtaagacaaatattctc 504

                                                                       
Query: 305 tgaagtagcaggaggatagaaccagcctctccctgagcaaacaatgcataccaatttaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaagtagcaggaggatagaaccagcctctccctgagcaaacaatgcataccaatttaca 564

                                                                       
Query: 365 agtgtaaagcgcaccacagtcactagggcaaggttgggtaatggaagctgtgtgagggca 424
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtgtaaagtgcactacagtcactagggcaaggttgggtaatggaagctgtgtgagggca 624

                                                                       
Query: 425 gcctgtcaatcaagagatctgattatgcagagcccacccttttttgtgtgttgatgttga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctgtcaatcaagagatctgattatgcagagcccacccttttttgtgtgttgatgttga 684

                                                                       
Query: 485 aatcaaagaaaaccaaccaccagtaagtgagtgggtggtgtgcattgggctgggcttgtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatcaaagaaaaccaaccaccagtaagtgagtgggtggtgtgcattgggctgggcttgtc 744

                                                                       
Query: 545 ccttaggctatgaactccctggtaaagcaggaaataacttttgtggagttccctatatct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccttaggctatgaactccctggtaaagcaggaaataacttttgtggagttccctatatct 804

                                                                
Query: 605 aaaatacctctggttgagacctcacagctggaggagaaactctgctgaggctt 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaaatacctctggttgagacctcacagctggaggagaaactctgctgaggctt 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no235_j23.g1 MSMg01no235_j23.g1 CHROMAT_FILE:
MSMg01no235_j23.g1 PHD_FILE: MSMg01no235_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:00 2005
         (292 letters)



>mm_chr1_175602885_175603576
          Length = 692

 Score =  464 bits (240), Expect = e-135
 Identities = 279/292 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatgccagaaaagtgcagcaggacaagcattatttcagtccataatctccatcaaagc 60
           ||||| |||||||| |||||||||||||||||||| |||| |||||||||| |||||| |
Sbjct: 201 tccatcccagaaaaatgcagcaggacaagcattatatcagcccataatctcaatcaaaac 260

                                                                       
Query: 61  tcgaggtttcccactgactcccaggccccaggtttccctgtgcttaccagtgaataatgt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgaggtttcccactgtctcccaggccccaggtttccctgtgcttaccagtgaataatgt 320

                                                                       
Query: 121 agagacactgaggaagcattaacttcaccattgaaggaggacagcttagttctataatca 180
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaacactgaggaaacattaacttcaccattgaaggaggacagcttagttctataatca 380

                                                                       
Query: 181 agagggaggtggataatgccaaatgcctttctagctatttgaggttgcagcttggagttg 240
            ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 381 ggagggaggtggataatgccaaatgcctttctatttatttgaggttgcagcttggagttg 440

                                                               
Query: 241 tgtgtttgtaacattatgctgtggcaagtctaggtcttgggagctactaatg 292
           |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtttgtaacattatgctctggcaagtctaggtcttgggagctactaatg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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