Query= MSMg01no235_k13.b1 MSMg01no235_k13.b1 CHROMAT_FILE:
MSMg01no235_k13.b1 PHD_FILE: MSMg01no235_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:02 2005
(308 letters)
>mm_chr1_91474053_91474760
Length = 708
Score = 582 bits (301), Expect = e-171
Identities = 304/305 (99%)
Strand = Plus / Minus
Query: 4 ggaattcacaaacttataaaaatgatgtttgtaattttaggactgaaagaaacggtggag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggaattcacaaacttataaaaatgatgtttgtaattttaggactgaaagaaacggtggag 449
Query: 64 gaagtctcagagtggcaacagtagccaacatgccactcatctaataagtcagtgccacta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaagtctcagagtggcaacagtagccaacatgccactcatctaataagtcagtgccacta 389
Query: 124 ggacctggccacaacctagccttacagcagtacagtggctcgaaaattccaggtccccag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggacctggccacaacctagccttacagcagtacagtggctcgaaaattccaggtccccag 329
Query: 184 atcttcaagatgagatatgggagccgcccacaggaaagagagggccgcaaccctggggtc 243
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 328 atcttcaagatgagatatgggagctgcccacaggaaagagagggccgcaaccctggggtc 269
Query: 244 actggagctggaggctaactctcagtgtgtatgaacaaggcttctgggaaatgccaccat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 actggagctggaggctaactctcagtgtgtatgaacaaggcttctgggaaatgccaccat 209
Query: 304 gaacc 308
|||||
Sbjct: 208 gaacc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_k13.g1 MSMg01no235_k13.g1 CHROMAT_FILE:
MSMg01no235_k13.g1 PHD_FILE: MSMg01no235_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:02 2005
(327 letters)
>mm_chr1_91324475_91325199
Length = 725
Score = 592 bits (306), Expect = e-173
Identities = 319/324 (98%), Gaps = 2/324 (0%)
Strand = Plus / Plus
Query: 1 tatacacactcatatacacatataaacatagatgcacacatatgcatacatacatataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatacacactcatatacacatataaacatagatgcacacatatgcatacatacatataca 260
Query: 61 cgtatacacacatacacatgtatacacgcatatacacattcacatatatacacatacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtatacacacatacacatgtatacacgcatatacacattcacatatatacacatacatg 320
Query: 121 cgcacacacacacacacagagaaaggaaagaaggagacttttgtatcctgcaaagcctac 180
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cg--cacacacacacagagagaaaggaaagaaggagacttttgtatcctgcaaagcctac 378
Query: 181 agagagaccaatagcccaggggcaggcccctccagaagacagcagattggaccatatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agagagaccaatagcccaggggcaggcccctccagaagacagcagattggaccatatttc 438
Query: 241 tttgctggttctgtacctcttccctgtcatctctcaagtcctcagcacaggctgcaagac 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctgctggttctgtacctcttccctgtcatctctcaagtcctcagcacaggctgcaagac 498
Query: 301 cttaatttcaggcacaatgccatg 324
|||||||||||||||||||||||
Sbjct: 499 tttaatttcaggcacaatgccatg 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 725
Length adjustment: 9
Effective length of query: 318
Effective length of database: 716
Effective search space: 227688
Effective search space used: 227688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
