CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGCTAATGACACTGAATGCCTGAGAAGCACCTGAAAAAATGTT
CAGCATCCTTCATCATCAGGGAAACGCAAATCAAAACAACGCTGAGATTC
CATCTCACACCCGTCAGAATGGCTAAGATCAAAAATTCAGGCGACAGCAG
ATGCTGGTGAAGATGTGGAGAAAGAGGAACACTCCTCCATTTAGGTCAGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAA
AATTGAACATAGTACTACTGGAGGATCCCACAATACTTCTCCTGGTCATA
TATCCAGAAGATGTTCCAATTGGTAAAAAGAACACATGCTCCACTATAAT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTA
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAAACAATGGAG
TACTACTTAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAACAGA
AATCACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GAATACCCAGGATACAAGATACAATTGGCAAAACACATGANACTCAAGAA
GAATGAAGACTGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATGAAAGCAACAAGTTGACAGG
AAAAAAAATGACACTGGCAATCATGGCTTAAAAGAATATTATCTTTAGAA
AAAAAGGAACAAAAAAAAGTCTTTAAATCTTGAAAAGTAGAAAGTAATAA
ATCCTCATGAACTGCTGTACATGTTCTTCCATTAAGAACTAATATTGTTT
TCAATATAGGCCCTCCCCACAAATAACATACATTTTTATTTGCAAAATTT
AGGCATATTATTTATAGAAAAGATAAATATTTTAAAACCATAGTCATGGG
AGTATCATAAATAGATTTATAATATTAATTCTTTAAAGCCATCAAATATA
CAGCCAAATAGTCCAAGCCTCTTAATTGGTTGGTAATTTTTTAATTTATC
TACATAGATTCTTCTTTTTAATGGAGACCTTTCAAATGGCTCCTAACATG
GAGTTTGCTAAGAGACACAGCATTATGTACTGAAGAGAGTTTAGTCTGTC
TGATCAAATAAAAATGTCTCTTTTTATTATTTAATATTTGAAATCATACA
AATAAAAGGTAGAAATGTGGAATTATCTATAATCAAATGCTTTTAAATAT
TGACATATTTTTAAGTATTTATAAGGTTTGTCTTTAAAACTTAGCTCTTT
TTAAACCCCATAGAATATATAA

Query= MSMg01no235_n24.g1 MSMg01no235_n24.g1 CHROMAT_FILE:
MSMg01no235_n24.g1 PHD_FILE: MSMg01no235_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:18 2005
         (629 letters)



>mm_chr1_5706010_5707039
          Length = 1030

 Score = 1170 bits (605), Expect = 0.0
 Identities = 624/631 (98%), Gaps = 3/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgaaagcaacaagttgacaggaaaaaaaa--tgacactggcaatcatggcttaaaag 58
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 201 aaatgaaagcaacaagttgacaggaaaaaaaaaatgacactggcaatcatggcttaaaag 260

                                                                       
Query: 59  aatattatctttagaaaaaaaggaacaaaaaaaagtctttaaatcttgaaaagtagaaag 118
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 aatattatctttagaaaaaaaggaacaaaaaaa-gtctttaaatcttgaaaagtagaaag 319

                                                                       
Query: 119 taataaatcctcatgaactgctgtacatgttcttccattaagaactaatattgttttcaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taataaatcctcatgaactgctgtacatgttcttccattaagaactaatattgttttcaa 379

                                                                       
Query: 179 tataggccctccccacaaataacatacatttttatttgcaaaatttaggcatattattta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tataggccctccccacaaataacatacatttttatttgcaaaatttaggcatattattta 439

                                                                       
Query: 239 tagaaaagataaatattttaaaaccatagtcatgggagtatcataaatagatttataata 298
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagaaaagataaatatttttaaaccatagtcatgggagtatcataaatagatttataata 499

                                                                       
Query: 299 ttaattctttaaagccatcaaatatacagccaaatagtccaagcctcttaattggttggt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaattctttaaagccatcaaatatacagccaaatagtccaagcctcttaattggttggt 559

                                                                       
Query: 359 aattttttaatttatctacatagattcttctttttaatggagacctttcaaatggctcct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aattttttaatttatctacatagattcttctttttaatggagacctttcaaatggctcct 619

                                                                       
Query: 419 aacatggagtttgctaagagacacagcattatgtactgaagagagtttagtctgtctgat 478
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacgtggagtttgctaagagacacagcattatgtactgaagagagtttagtctgtctgat 679

                                                                       
Query: 479 caaataaaaatgtctctttttattatttaatatttgaaatcatacaaataaaaggtagaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caaataaaaatgtctctttttattatttaatatttgaaatcatacaaataaaaggtagaa 739

                                                                       
Query: 539 atgtggaattatctataatcaaatgcttttaaatattgacatatttttaagtatttataa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgtggaattatctataatcaaatgcttttaaatattgacatatttttaagtatttataa 799

                                          
Query: 599 ggtttgtctttaaaacttagctctttttaaa 629
           | |||||||||||| ||||||||||||||||
Sbjct: 800 gttttgtctttaaaccttagctctttttaaa 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space:   631380
Effective search space used:   631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)