BAC Information

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BAC

Clone NameMSMg01-235P21
Chromosome1 (Build37)
Map Location 167,570,254 - 167,570,900
singlet/doubletsinglet
Overlap genenone
Upstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1
Downstream geneRcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235P21.T7 (MSMg01no235_p21.b1)MSMg01-235P21.TJ (MSMg01no235_p21.g1)
ACCAG401385AG401386
length729728
length of high quality
(start - end)		684 (46 - 729)648 (76 - 723)
definitionCHROMAT_FILE: MSMg01no235_p21.b1 PHD_FILE: MSMg01no235_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:26 2005CHROMAT_FILE: MSMg01no235_p21.g1 PHD_FILE: MSMg01no235_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATTGAGTAACACCGAATGGCTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAAGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAACA
GATGCTGGGGAGGATGTGGAGAAAGAGGAACACTTTTCCACTGCTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAGTCAGTATGGAGGTTCCTCAG
AAAATTGGACAAATACTACCGGAAGATCCTGCAATACCTCTCCTGAGCAT
ATACCCAGAAGAAGTTCCAACTGGTAATAAGAACACCTGCTCCACTATGT
TCATAGCAGCCTTATTTATAACACCCAGAAGCTGGAAAGAACCCAAATGT
CCCTCAACAGAAGAACGGATATGGAAAATGTGGTGCATTTACACAATGAA
GCACTACTCAGCAATTAAAAACAATGGACTTACGAAATTCTTGGACAAAT
GGAGGTATCTGGAGGATATCATCCTTAGTGAGGTAACCCAATCACAAAAG
AAGTCATTAGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACAT
AGAACACCCAAGATACAATTTGCAAAACACAAGAAAATCAAGAAGAGGGA
AGACCAATGGGTGGATACATCATTCCTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGAAATGGACAGCATAGACTT
TTAGTTTGTAAATACTAAGGGATTACCTTGTTTTAGTAATAACCGCTTCT
TCGTTTAGGAAGTAGAGGTTTCTTTGGTGTCGGGGCACATTTTTTTTTCT
CCCAGTTAGATTTTCATGAATAAACTATCCTGGCATCCAGAACTCATTAA
TATTTTAAAGAGTATTCTCAGAGTTCCTGCCTGGAGCCCTAAGAATTAAA
GACTCAAGTTAGGACAGTTTCAAATAAAACAAAGGGCGGAGCCTGCATGC
TAGAATCCCAGTGCTGTAATTTTTCTAGTGTCAAACCCTAGGGGGAAATT
TTTTGACAATTCAGGGTGAGGAACCACTGTGTGCCAAATGCTTGCTGGCT
GAATGAGCAAGGTGCACTGTTGGACGCCAAGGACAGGACATGACTGAGTC
TGTTGAGGATAGCCCACTGCCTGTTATTTCCTACCCCTTTAGCTATTTGG
TAGGATGGTGATTCTCAATTATGCTTCCTCAGAGTACCAAAGTGTATATT
GATAAGGAATTTGGGACAAATTGTAGTCACTTAGAATTACTGAATATTAT
CCTAAATGTCTATCATAAGCATCAAAGAGAAATGTTTAAAGACTTAATAT
AGTTAAGAAGCTATGACTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_p21.g1 MSMg01no235_p21.g1 CHROMAT_FILE:
MSMg01no235_p21.g1 PHD_FILE: MSMg01no235_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:27 2005
         (648 letters)



>mm_chr1_167570054_167571100
          Length = 1047

 Score = 1230 bits (636), Expect = 0.0
 Identities = 645/648 (99%), Gaps = 1/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaagaaatggacagcatagacttttagtttgtaaatactaagggattaccttgtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aagaagaaatggacagcatagacttttagtttgtaaatactaagggattacgttgtttta 260

                                                                       
Query: 61  gtaataaccgcttcttcgtttaggaagtagaggtttctttggtgtcggggcacatttttt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaataaccgcttcttcctttaggaagtagaggtttctttggtgtcggggcacatttttt 320

                                                                       
Query: 121 tttctcccagttagattttcatgaataaactatcctggcatccagaactcattaatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctcccagttagattttcatgaataaactatcctggcatccagaactcattaatattt 380

                                                                       
Query: 181 taaagagtattctcagagttcctgcctggagccctaagaattaaagactcaagttaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagagtattctcagagttcctgcctggagccctaagaattaaagactcaagttaggac 440

                                                                       
Query: 241 agtttcaaataaaacaaagggcggagcctgcatgctagaatcccagtgctgtaatttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttcaaataaaacaaagggcggagcctgcatgctagaatcccagtgctgtaatttttc 500

                                                                       
Query: 301 tagtgtcaaaccctagggggaaattttttgacaattcagggtgaggaaccactgtgtgcc 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tagtgtcaaaccctagggggaaattttttgacaat-cagggtgaggaaccactgtgtgcc 559

                                                                       
Query: 361 aaatgcttgctggctgaatgagcaaggtgcactgttggacgccaaggacaggacatgact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatgcttgctggctgaatgagcaaggtgcactgttggacgccaaggacaggacatgact 619

                                                                       
Query: 421 gagtctgttgaggatagcccactgcctgttatttcctacccctttagctatttggtagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagtctgttgaggatagcccactgcctgttatttcctacccctttagctatttggtagga 679

                                                                       
Query: 481 tggtgattctcaattatgcttcctcagagtaccaaagtgtatattgataaggaatttggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tggtgattctcaattatgcttcctcagagtaccaaagtgtatattgataaggaatttggg 739

                                                                       
Query: 541 acaaattgtagtcacttagaattactgaatattatcctaaatgtctatcataagcatcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acaaattgtagtcacttagaattactgaatattatcctaaatgtctatcataagcatcaa 799

                                                           
Query: 601 agagaaatgtttaaagacttaatatagttaagaagctatgactttttt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agagaaatgtttaaagacttaatatagttaagaagctatgactttttt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space:   661606
Effective search space used:   661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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