Query= MSMg01no236_c22.b1 MSMg01no236_c22.b1 CHROMAT_FILE:
MSMg01no236_c22.b1 PHD_FILE: MSMg01no236_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:41 2005
(687 letters)
>mm_chr1_11555956_11557042
Length = 1087
Score = 766 bits (396), Expect = 0.0
Identities = 436/454 (96%), Gaps = 8/454 (1%)
Strand = Plus / Minus
Query: 5 gaattctagccttgtgcctaggtacgtagtttggcaggctgcagaagttctagggaaaac 64
|||||||||||||| || ||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 454 gaattctagccttgggcataggtacgtagtttggcaggccgcagaagttctaggaaaaac 395
Query: 65 ttccaggcagattctccccgtttcctctgctgactcatcttaagtaaaacatcctagcat 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttccaggcagattctgcccgtttcctctgctgactcatcttaagtaaaacatcctagcat 335
Query: 125 cagagactgagaaagcagttgatccgggtgctttttccaagtgaaaagtataaaatgtga 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 334 cagagactgagaaagcagttgatctgggtgctttttccaagtgaaaagtataaaatgtga 275
Query: 185 gggaggcaagaaaagtaagagaagctagaagggccacagcttagttgctagagggcttga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gggaggcaagaaaagtaagagaagctagaagggccacagcttagttgctagagggcttga 215
Query: 245 atgccaggatcctagcacacacaaaccagctttagtaatgcttatctgcatttctagggc 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 214 atgccaggatcctagcacacacaaaccagctttagtaatgcatatctgcatttctagggc 155
Query: 305 taggactgtggatgtgagtggatcagaaggccaaggttttacacagcttaacagagtgag 364
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 154 taggactgtggatgtgagtggatcagaaagccaaggttttacacagcttaatagagtgag 95
Query: 365 ttcaaagctatcctggcctatgtgaacctagtatcagtacagacagacagaca------- 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ttcaaagctatcctggcctatgtgaacctagtatcagtacagacagacagacacacagac 35
Query: 418 -gacagacagtgagatatgtatttagatcccaga 450
||||||||||||||||||||||||||| |||||
Sbjct: 34 agacagacagtgagatatgtatttagattccaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_c22.g1 MSMg01no236_c22.g1 CHROMAT_FILE:
MSMg01no236_c22.g1 PHD_FILE: MSMg01no236_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:41 2005
(446 letters)
>mm_chr1_11427004_11427846
Length = 843
Score = 789 bits (408), Expect = 0.0
Identities = 436/446 (97%), Gaps = 3/446 (0%)
Strand = Plus / Plus
Query: 1 tccattgctgagaatggcacagcatttgcaaatcagttttattatttataccagagaggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tccattgctgagaatggcacagcatttgcaaatcagttttattatttatatgagagaggt 260
Query: 61 tttgcttatttatttgtttctttaaattaaccagacatggacatcttttgaggctttgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcttatttatttgtttctttaaattaaccagacatggacatcttttgaggctttgac 320
Query: 121 tatccatgaaatatgactgaagacaccagtcttttctggaaatggtcaacgagttttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatccatgaaatatgactgaagacaccagtcttttctggaaatggtcaacgagttttgag 380
Query: 181 aatggaagagtaactgttggaggatatcaaataacttgtaaatcattagcatctttctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggaagagtaactgttggaggatatcaaataacttgtaaatcattagcatctttctct 440
Query: 241 atagattatagactgttcctaagtgaactctcataacacactgaaattactcgtcctcat 300
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 atagattatagaccgttcctaagtgaactctcataacacactgaaagtactcgtcctcat 500
Query: 301 tgccttttcaaaaataaaggcttaaagaggctcaatagttaacttgagatcacttccagc 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccttttcaaaactaaaggcttaaagaggctcaatagttaacttgagatcacttccagc 560
Query: 361 tgctaaaactatgactgtgctttgggtggggggtgggggtggcttgcccttaaattgaaa 420
|||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct: 561 tgctaaaactatgactgtgctttggg-gggggg--ggggtggcttgaccttaaattgaaa 617
Query: 421 actgtcccaatgaaagcttctcttct 446
||||||| ||||||||||||||||||
Sbjct: 618 actgtcctaatgaaagcttctcttct 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 843
Length adjustment: 10
Effective length of query: 436
Effective length of database: 833
Effective search space: 363188
Effective search space used: 363188
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
