BAC Information

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BAC

Clone NameMSMg01-236D08
Chromosome1 (Build37)
Map Location 171,189,294 - 171,189,584
singlet/doubletsinglet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236D08.T7 (MSMg01no236_d08.b1)MSMg01-236D08.TJ (MSMg01no236_d08.g1)
ACCAG401535AG401536
length721799
length of high quality
(start - end)
234 (120 - 353)291 (128 - 418)
definitionCHROMAT_FILE: MSMg01no236_d08.b1 PHD_FILE: MSMg01no236_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:43 2005CHROMAT_FILE: MSMg01no236_d08.g1 PHD_FILE: MSMg01no236_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCTGA
TCTTTCTCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTT
TTTCTGCATCTAACCACATGATCATGTGGTTTTTGTCTTTGAGTTTGTTT
ATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCAT
CCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTT
CTTGTATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTC
ATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGG
TTTATTTATCATAGTACTACTGCCTTCATAAAATGAGTTGGGTAGAGTAC
CTTCTACTTCCATTTTGTGAAATAATTTGTGCATAATTGGAATTACATCT
TCTTTGAAGGTCTGGTAGAACTCTGCACTAAATCCATCTGGTCCTGGGCT
TTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGCGATA
TGTTACTGTTTATATGGTCAACTTGATCCTGATTCAACTTTGTTACCTGC
TATCTGTCCATATTTTTGTCCCTTTCGTCCACCCCTTTTTGTTTTTGTTG
ACTATACCCCTTTTGTACAACGATCCCGACGTTGTTTATGCATTTCCTCA
GGATCTGTTGCTATGTCTTTT
CTCCCTTTTTTATCTTTTCTTTCTTCTTCCTCTTCCCTCACCCNCCCCNC
CCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGTTTTATTTCCACTGTCCA
AACTTGAAGGCTAGCTAATGTTTTGTCCCAGGGGCAAATGGCTTAGAAGT
AACAACATCTTAATTAATATCACTGACAGGGCCCATGTTTCTATGTAGAT
TCCAAAAAGATGAATTTGATAGTTGCAACTTGATTTTCAACCTGGTAGAA
TTCTTTTTCATGCTAGATATATTGAGCATGAAACCGCATAATAATTTTTC
ATTTTTATGTAATTTATTGCACTTCTGCCTCTGGATGTCGAACTGAGAGG
TAAAGAAGAAATAGAGGTCTTTTTTCCCCCCCCCCGCAAATTAAAGGGAT
GATAAACACATGGGACACGATGAACTTGAGTCACTAAATGCACCACTCAG
GTTTGGAAGCATGCAAGATGCACAGCAGCAAAATCAAGTGATGCGTGCTG
AGTTCGATATATCATACAACTTATGTGGAGGAAAGGCAAGGCGAACTGTC
ATATCACAAGCTTCTGTACTTGTCTCCTTCTTATCCTTCTGCATATCACT
GCTATTTCTCAAGCACTGAGGGTTTGACTTAATTCTCTCAGCTCTGTGTA
TTGTACCTTCTGGCAATCTGCTCCTTATCATTTGTCTTAGTTAATTTCCT
GACTATCCACTTATAAATTTTGTATATATATACTTCCCTCCATTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_d08.g1 MSMg01no236_d08.g1 CHROMAT_FILE:
MSMg01no236_d08.g1 PHD_FILE: MSMg01no236_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:43 2005
         (291 letters)



>mm_chr1_171189094_171189784
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggttttatttccactgtccaaacttgaaggctagctaatgttttgtcccaggggcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 491 aggggttttatttccactgtccaaacttgaaggctagctaatgttttgtttgaggggcaa 432

                                                                       
Query: 61  atggcttagaagtaacaacatcttaattaatatcactgacagggcccatgtttctatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atggcttagaagtaacaacatcttaattaatatcactgacagggcccatgtttctatgta 372

                                                                       
Query: 121 gattccaaaaagatgaatttgatagttgcaacttgattttcaacctggtagaattctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gattccaaaaagatgaatttgatagttgcaacttgattttcaacctggtagaattctttt 312

                                                                       
Query: 181 tcatgctagatatattgagcatgaaaccgcataataatttttcatttttatgtaatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcatgctagatatattgagcatgaaaccgcataataatttttcatttttatgtaatttat 252

                                                              
Query: 241 tgcacttctgcctctggatgtcgaactgagaggtaaagaagaaatagaggt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgcacttctgcctctggatgtcgaactgagaggtaaagaagaaatagaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)