BAC Information

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BAC

Clone NameMSMg01-236E23
Chromosome1 (Build37)
Map Location 7,126,599 - 7,127,118
singlet/doubletsinglet
Overlap genePcmtd1
Upstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608
Downstream geneLOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236E23.T7 (MSMg01no236_e23.b1)MSMg01-236E23.TJ (MSMg01no236_e23.g1)
ACCAG401606AG401607
length745758
length of high quality
(start - end)
520 (121 - 640)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no236_e23.b1 PHD_FILE: MSMg01no236_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:50 2005CHROMAT_FILE: MSMg01no236_e23.g1 PHD_FILE: MSMg01no236_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCACCAA
TGTGTCCCTGATTCATCATCACGGTTAAGAACTGAACGATGACTTTAGAA
CACGGCCTGTTGTACCACTGGCGTTTGCCTCTCTTCTCAGCATTGTTGAT
TCTCTTGAGAGCATCCGCCAGAACAGTCATTCGCACCATGGTGGTGGTGA
GGGAAGATGCCAGAAAGAGTGAGCTGGGCAAACGCACAGAATTATGGGGC
CCAAATCTTTTACCTTATAGTAATGAACTAAATACCAAACCATTACCGTT
ACTTCATTCTTACAGCTGCTGATTCAGGTGAAGGTGGTTCCTCATTAATA
CCGTTTCTTTTTGGCTTGAGGATTTATTCCTATTTTCCAAATAGAACCTG
TAATATAGAAACTATAGTTCTAGTAAGAGCAGTAATACATACATATAGTT
ATCCAACTTAAATACTTTATTTTCCTAGCCTCTTGACTAATTCTTTCATT
ATCAAAAGTGACTAAGGAGAGTCCCATAATCATTCCAGTGCTGAGAACAC
TGCCACTGTGGTGGTTTCTACAGCGTGCACTCTTAAAGGTGGAGCAGGCC
ACAAGCAGGGGACTCATTGGCAGCTTGTCCTGAGGGGCTGCTGGTTAGTT
GTAGTGTGCGCTACCATCCTGTTTGGTCTGCATGCCTTGTTGCAGGATGG
TAAATGATCCTTATTTAGAGTGCTTACATTTCCTTTGCCCTCATA
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACGGAATGGCA
GAGAAGCACCTGAAAAAATGTTTAACATCCTTAATCATCAGGGGAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGCA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTAGAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAAATGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTATATATCCACACCACGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAAACTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAATA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATCA
GTGCATATTAGCCCCAAACCTAGGATACCCCAGATATAAGATACAATTTC
CTCAAAACATGAAACTCAAGAAAAATGAAGACTGAAGTGCGGACACTATG
CCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_e23.b1 MSMg01no236_e23.b1 CHROMAT_FILE:
MSMg01no236_e23.b1 PHD_FILE: MSMg01no236_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:50 2005
         (520 letters)



>mm_chr1_7126399_7127318
          Length = 920

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgtttgcctctcttctcagcattgttgattctcttgagagcatccgccagaacagtcat 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 gcgtttgcctctcttctcagcattgttgatgctcttgagagcatccgccagaacagtcat 260

                                                                       
Query: 61  tcgcaccatggtggtggtgagggaagatgccagaaagagtgagctgggcaaacgcacaga 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcacaccatggtggtggtgagggaagatgccagaaagagtgagctgggcaaacacacaga 320

                                                                       
Query: 121 attatggggcccaaatcttttaccttatagtaatgaactaaataccaaaccattaccgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatggggcccaaatcttttaccttatagtaatgaactaaataccaaaccattaccgtt 380

                                                                       
Query: 181 acttcattcttacagctgctgattcaggtgaaggtggttcctcattaataccgtttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttcattcttacagctgctgattcaggtgaaggtggttcctcattaataccgtttcttt 440

                                                                       
Query: 241 ttggcttgaggatttattcctattttccaaatagaacctgtaatatagaaactatagttc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggcttggggatttattcctattttccaaatagaacctgtaatatagaaactatagttc 500

                                                                       
Query: 301 tagtaagagcagtaatacatacatatagttatccaacttaaatactttattttcctagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtaagagcagtaatacatacatatagttatccaacttaaatactttattttcctagcc 560

                                                                       
Query: 361 tcttgactaattctttcattatcaaaagtgactaaggagagtcccataatcattccagtg 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttgactaattctttcattatcagaagtgactaaggagagtcccataatcattccagtg 620

                                                                       
Query: 421 ctgagaacactgccactgtggtggtttctacagcgtgcactcttaaaggtggagcaggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgagaacactgccactgtggtggtttctacagcgtgcactcttaaaggtggagcaggcc 680

                                                   
Query: 481 acaagcaggggactcattggcagcttgtcctgaggggctg 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaagcaggggactcattggcagcttgtcctgaggggctg 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)