BAC Information

Click to search

BAC

Clone NameMSMg01-236J15
Chromosome1 (Build37)
Map Location 11,762,670 - 11,763,131
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneLOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236J15.T7 (MSMg01no236_j15.b1)MSMg01-236J15.TJ (MSMg01no236_j15.g1)
ACCAG401807AG401808
length736800
length of high quality
(start - end)
464 (72 - 535)228 (128 - 355)
definitionCHROMAT_FILE: MSMg01no236_j15.b1 PHD_FILE: MSMg01no236_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:12 2005CHROMAT_FILE: MSMg01no236_j15.g1 PHD_FILE: MSMg01no236_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAACTGTTGCTGATGGTTTGATAGTGCAGAAGATGCTCCCAAAA
TACGGCTGTAGGAGATGAGAGGGCTTCACCCCAAATATGCTTTTTGGGCA
CAGAATTATTTTAGAAATAAGAGGAGGAAGAATTCAGACAATAGTGTAGA
AATGAACCTTCTTGAAGGGAAACTTATATTAATAAAAGGGATGTCTATTT
TTGTCCTTGTCTCCATCTTGTCAAGCAAGAAAAGAGGAAGTTAATCAGCC
AACATCTTGGTGGATGAGAAGGGATCCATAGAGGTCAAAATAACTGTGTA
TGCCCTTACTTACTAATCCCTTCCTGTCCCTTTCCCTGCCTGGCCTTCTT
TACCTGTATGCTCATACACTTGTTTTATATAGTTAATAAGTCTTTTGCTA
TAAAAACTGGCAGCTAACAACTAAGGGGAAAAAATAAAGGAAATTATTTT
CCACTCCAGATTTGTGGCTCTGTGTAGCAAATGCACTAGCCAAAACAGCT
GCATCTCAAACTACACTGGATAACTGTTAAAGTGAGTCCCTAGAAAAACC
ATACCATACTGTGATAACTCTTACCTAATATTTTTTCAAACTACAAAATT
ACGGAAATCGACGTTTGTAACAGTAGTTTAACATATATGACAGCACAGCT
TACGTTCTGAAGTAACTGACATGTAGTGTGGCCCCC
CTATTTCCCCTTCCTCCTCTTTTTTTTTCTTCCCCTTTATCAATTTNCCC
CTCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTATCTCTGTACCTCATT
TTTAATAGGGTTATTTGGTTCTTTGACCCCTAATTTCTTGAATTCTATAT
ATATATATTGGAAATTAGCCCTCTATTGGATGCAGGATTGGTAAAGATCT
TTTCCCAATCTTCTGGTTGCTGCTTTGCCCTATTGACAGTGTCCTTTGCT
TTACAGAAACTTTGCAATATTAATAGGTCCCATTTGTCAATTCTTTATCT
TAGAGCATATACTATTGGTATTCTAATGTTTCTTTGGATTTCCTCAGTCT
CTGTTGTTATTTCTCTTTTTTTTTCCCGCCCTCGCCCCCTGCCATACTGT
CCCTGTGCCCTCTATTTACTCTGCCTAAAGAAAAATCAATGTTGTTGTTG
ATTCGCTCACATAACCAGCTTCTATTTTGATCGATTCTTTGTGCATTCCT
TTAGATTGGTCAATTTCAGCCTTGAGTTTGATTACCTCCTGCCTTCTATC
CCTCTTGTGCGCACCCGCTTTTCCTTTTTTTCCCCCCCCCTTTTTTGTTC
ACAACCCCCCGCTTTTTTCTGCCCCCCTGTTGTCTTCAATCTCCAATTTT
GATCCTGTTTTGGCCTGTCTCCCCCTTTATTTTCCCATTTTTTGCCTCTC
ACCCTTATACTTTTTTAGGCTTTATTTTTTCTTCAATATTGTATTTATTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_j15.b1 MSMg01no236_j15.b1 CHROMAT_FILE:
MSMg01no236_j15.b1 PHD_FILE: MSMg01no236_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:12 2005
         (464 letters)



>mm_chr1_11762379_11763240
          Length = 862

 Score =  847 bits (438), Expect = 0.0
 Identities = 457/464 (98%), Gaps = 2/464 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttgatagtgcagaagatgctcccaaaatacggctgtaggagatgagagggcttcaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 753 gtttgatagtgcagaagatgctcccaaaatacggctgtaggagatgagaaggcttcaccc 694

                                                                       
Query: 61  caaatatgctttttgggcacagaattattttagaaataagaggaggaagaattcagacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 caaatatgctttttgggcacagaattattttagaaataagaggaggaagaattcagacaa 634

                                                                       
Query: 121 tagtgtagaaatgaaccttcttgaagggaaacttatattaataaaagggatgtctatttt 180
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 633 tagtgtagaaatgaaccttcttgaagggaaac--atattaataaaagggatgtctatttt 576

                                                                       
Query: 181 tgtccttgtctccatcttgtcaagcaagaaaagaggaagttaatcagccaacatcttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgtccttgtctccatcttgtcaagcaagaaaagaggaagttaatcagccaacatcttggt 516

                                                                       
Query: 241 ggatgagaagggatccatagaggtcaaaataactgtgtatgcccttacttactaatccct 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggatgagaagggatccatagaagtcaaaataactgtgtatgcccttacttactaatccct 456

                                                                       
Query: 301 tcctgtccctttccctgcctggccttctttacctgtatgctcatacacttgttttatata 360
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 455 tcctgtccctttccctgcctggccttctttacctgtatgctcatacactaattttatata 396

                                                                       
Query: 361 gttaataagtcttttgctataaaaactggcagctaacaactaaggggaaaaaataaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gttaataagtcttttgctataaaaactggcagctaacaactaaggggaaaaaataaagga 336

                                                       
Query: 421 aattattttccactccagatttgtggctctgtgtagcaaatgca 464
           |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 335 aattattttccactccagatttgtggttctgtgtagcaaatgca 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 862
Length adjustment: 10
Effective length of query: 454
Effective length of database: 852
Effective search space:   386808
Effective search space used:   386808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)