Query= MSMg01no236_m14.b1 MSMg01no236_m14.b1 CHROMAT_FILE:
MSMg01no236_m14.b1 PHD_FILE: MSMg01no236_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:26 2005
(689 letters)
>mm_chr1_84276810_84277899
Length = 1090
Score = 1228 bits (635), Expect = 0.0
Identities = 674/687 (98%), Gaps = 3/687 (0%)
Strand = Plus / Plus
Query: 5 gaattccagcattcc-ggtcccccactatggagcgagctgagcccacacaccttctctaa 63
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagca-gcctggtcccccactatggagcgagctgagcccacacaccttctctaa 263
Query: 64 catggtggaaggtattccctcaaaccatgaaccaagcaaaaccctccattaagttgcttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catggtggaaggtattccctcaaaccatgaaccaagcaaaaccctccattaagttgcttc 323
Query: 124 tgtcagttatggtatcaaaccaccagcaacggtctctaatacagatttcaacctcttgat 183
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 tgtcagttatggtatcaaagcgccagcaatggtctctaatacagatttcaacctcttgat 383
Query: 184 cagccagaagtttaaccggagaccaaaagtaaagtctggcagccatgcctttctctctgt 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagccagaagtttaaccggaaaccaaaagtaaagtctggcagccatgcctttctctctgt 443
Query: 244 gctttctta-tttattgacagcacaggcattggctaaaatgggactaaagacacaaatct 302
||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 gctttcttattttatccacagcacaggcattggctaaaatgggactaaaggcacaaatct 503
Query: 303 taagcaaacaaaacacagatgtagggataaacatggaaagagtgtcatctcccagaaatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taagcaaacaaaacacagatgtagggataaacatggaaagagtgtcatctcccagaaatg 563
Query: 363 attcggctgaaacctttgcggagcatctaatgtaaaggtgctttatacacagtcacagaa 422
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attcggctgaaacctttgcagagcatctaatgtaaaggtgctttatacacagtcacagaa 623
Query: 423 gtttctagaacttatctgtcaggcgtcattttgagcaagttcctctcaatccttggaatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtttctagaacttatctgtcaggcgtcattttgagcaagttcctctcaatccttggaatg 683
Query: 483 tacccacccctaagtgtgggcttcttttctcttgacagtcttgtttgaatcaccagcctt 542
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 684 tacccacccctaagtgtgggcttcttttctcttgacagtcttgtttaaatcaccagcctt 743
Query: 543 cctctcctctgaggacttacatgtcagttgtaactcatgattataatactcttgcctatt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctctcctctgaggacttacatgtcagttgtaactcatgattataatactcttgcctatt 803
Query: 603 acatttgggaagcaatcattaaatccactggaaaacccaggcagattttgaagtatcaaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acatttgggaagcaatcattaaatccactggaaaacccaggcagattttgaagtatcaaa 863
Query: 663 gctgaagtaatacctccatttgaaaaa 689
|||||||||||||||||||||||||||
Sbjct: 864 gctgaagtaatacctccatttgaaaaa 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space: 733320
Effective search space used: 733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_m14.g1 MSMg01no236_m14.g1 CHROMAT_FILE:
MSMg01no236_m14.g1 PHD_FILE: MSMg01no236_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:26 2005
(362 letters)
>mm_chr1_84443738_84444499
Length = 762
Score = 700 bits (362), Expect = 0.0
Identities = 362/362 (100%)
Strand = Plus / Minus
Query: 1 ttttcaaacgaattttgaagtattaaaacaagcttaggtttatagcattgctaaacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttttcaaacgaattttgaagtattaaaacaagcttaggtttatagcattgctaaacacac 368
Query: 61 tgtgtgactaaagagatgtacccacacttatatgtaattttttagcctgagaaatgccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgtgtgactaaagagatgtacccacacttatatgtaattttttagcctgagaaatgccaa 308
Query: 121 cttatgtatacagaaaacaatacaaaacacttatctgataatctcatttaaaagtgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttatgtatacagaaaacaatacaaaacacttatctgataatctcatttaaaagtgaaat 248
Query: 181 atgtaacagctttacataatattatatcataaagtatgcttgcatgcataattcctagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgtaacagctttacataatattatatcataaagtatgcttgcatgcataattcctagat 188
Query: 241 tatagttcatttttctaaagtgctcagttcagcattttttagccaatccatgcaggtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tatagttcatttttctaaagtgctcagttcagcattttttagccaatccatgcaggtgtg 128
Query: 301 caactattggcagggaccagttttgagcatctccttcaacccagtggaccacccatgcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 caactattggcagggaccagttttgagcatctccttcaacccagtggaccacccatgcct 68
Query: 361 gc 362
||
Sbjct: 67 gc 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
