BAC Information

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BAC

Clone NameMSMg01-236M22
Chromosome1 (Build37)
Map Location 110,764,460 - 110,764,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236M22.T7 (MSMg01no236_m22.b1)MSMg01-236M22.TJ (MSMg01no236_m22.g1)
ACCAG401952AG401953
length752754
length of high quality
(start - end)
370 (383 - 752)334 (385 - 718)
definitionCHROMAT_FILE: MSMg01no236_m22.b1 PHD_FILE: MSMg01no236_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:28 2005CHROMAT_FILE: MSMg01no236_m22.g1 PHD_FILE: MSMg01no236_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCACACAGAACTTCATTCTTGGCAAGCCATAACCATAGATTGGG
CAAATTTTGCAAATATTCTAACTTCCATTTCAACCTTATGTCACTTGTTA
ACTTGATGTTGTTCCTGGATGTATGTTCATTCTCCTTCACATTTCATGTG
TCTTTCTTACTTTGTCTGCTTTTTTATTCTTTTGTCTCTACCTACACACA
TAGCCAAATAATTGATCTGTCTATCCCTTATCTACCATCTAACCACAGGC
TTTAGATTTTTATTGACCAATTAACTTGGGGAACAAGGTTACATAGCATC
ATTTGATGTATCTAATGATCTCCTCCTCACCCGCAACCATATCTTGGCAG
GGGGTGGGAAACAGTATTTATCATTTGAATACATTGCAGCATCTGAGCAA
CCCTCTACATTTATTGCCTTAGATTTAGGGGGAGAAACTGTTTTGATTTA
GTTAAACATGTTCTTTGAGCTTTTTCCTTGTATATTTCTCCTTATTCCAT
GAAAAATTATATGTTATGAAAATATCATGATGTCCCAAATTGTTTCTTTG
CTTTGTTATGTTTAACTTTATTCATTTTTAGTGAATAAATTCTCTTTATC
TTGTCTTCATGAACAGATATCCTCTGTTCTTTTTAATCCATTTGAAGCAT
TCCTCTGAGCCTTTTGTTTGACTTTGTGAATCTGACATTACGATTTATTT
CA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGCAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACTGTGTCTTTTGCTTT
GCAGAACCTTTGCAATTTTATGAGGTCCCATTTATCGATTCTTGATCTTA
CAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATA
TCTTTGAGGCTTTTCCTTACTTTCTCCTCTACTCAGTTTCAGTGTCTCTG
GTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGA
GATAGTGGATGATCACAGTCAGCTATTGGATGGGTCACACGGCCCCCAAT
GGAGGAGCTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTAT
AGGTAGAACAACAATATGAACTAACCAGTACCCCGGAGCTCTTGTCTCTA
GCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAG
GCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGCGAAGGCCAGG
GCCAAAAAGGTGAAGTGGGTGGGTAGGGAAAATGGCGGGGGGTATATACT
TCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_m22.b1 MSMg01no236_m22.b1 CHROMAT_FILE:
MSMg01no236_m22.b1 PHD_FILE: MSMg01no236_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:28 2005
         (370 letters)



>mm_chr1_110764260_110765028
          Length = 769

 Score =  654 bits (338), Expect = 0.0
 Identities = 362/370 (97%), Gaps = 1/370 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaccatatcttggcagggggtgggaaacagtatttatcatttgaatacattgcagcat 60
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gcaaccatatcttggcagggggagggaa-cagtatttatcatttgaatacattgcagcat 259

                                                                       
Query: 61  ctgagcaaccctctacatttattgccttagatttagggggagaaactgttttgatttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgagcaaccctctacatttattgccttagatttagggggagaaactgttttgatttagt 319

                                                                       
Query: 121 taaacatgttctttgagctttttccttgtatatttctccttattccatgaaaaattatat 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaacatgttctttgagctttttccttgtatatttctccttattccatgaaaaattatat 379

                                                                       
Query: 181 gttatgaaaatatcatgatgtcccaaattgtttctttgctttgttatgtttaactttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttatgaaaatatcatgatgtcccaaattgtttctttgctttgttatgtttaactttatt 439

                                                                       
Query: 241 catttttagtgaataaattctctttatcttgtcttcatgaacagatatcctctgttcttt 300
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 440 tatttttagtgaataaattctctttatcttgtctacatgaacagatatcctctgttcttt 499

                                                                       
Query: 301 ttaatccatttgaagcattcctctgagccttttgtttgactttgtgaatctgacattacg 360
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 500 ttgatccatttgaagcgttcctctgagccttttgtttgactttgtgaatctgacattaca 559

                     
Query: 361 atttatttca 370
           ||||||||||
Sbjct: 560 atttatttca 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space:   274360
Effective search space used:   274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)