BAC Information

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BAC

Clone NameMSMg01-236M24
Chromosome1 (Build37)
Map Location 175,969,396 - 176,124,463
singlet/doubletdoublet
Overlap geneOlfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
Upstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205
Downstream geneOlfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236M24.T7 (MSMg01no236_m24.b1)MSMg01-236M24.TJ (MSMg01no236_m24.g1)
ACCAG401956AG401957
length756757
length of high quality
(start - end)		686 (71 - 756)369 (385 - 753)
definitionCHROMAT_FILE: MSMg01no236_m24.b1 PHD_FILE: MSMg01no236_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:28 2005CHROMAT_FILE: MSMg01no236_m24.g1 PHD_FILE: MSMg01no236_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,123,909 - 176,124,463)(175,969,396 - 175,969,764)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGTACTTTCCTAGAAAGAGAAGTTAGTGACCCCCAGCAACTT
TCACATTCGGAAACTAAAAAGGGGCACGGCAAAGATTCTAGCCCAGGTCT
GCACTTTAGGCTTGATGTGCTTTTAATCTGTGTTGGAAACATGATTTAAA
CAATTCAGTGACTCTGAACACATTCCAATTCAGAAAGAAGCTAGCTCTTC
ATTCATAGAATAGACTTGGTCCCTTCAATCCATAATGCTACATAAGGTAA
TACGTCTACATAATCCAAATGATTAAGTTACTTTTAAGCTTATTTAAGCT
CTAAAATTTTGAATGTACCATTTGAATCATACAGACTCTTAACAATTACA
AAGGCATAGAGGAGAACAAGGTATGGTGTTGGCACACGCCTTTAATTCCA
GATACTCCAAAGCTGAGGTAGGGTGATTTTGTGTTTGAGGCATGGTAGGA
GAACATAATATGTATGTCTTAAGGTAAGACAAATTAAAGAGGCATGTAGA
GAAGCAGAAGGAGTACTAGAAGGACAAAAATAATCAAATAAAAAAAGATC
TCTGTCTCCCCATTCTGTTTAGGACAGTAGAAAGTAGTCCAGCTGAGTGG
GGACAAAGAATTGGGCATTGGAAAGCCAACTGCCAATGAATATTAACAGG
TTGAACAAAGTTCCATACCTTGTAATCGTCATCATCAGCCAACTTTTTCT
TCTTAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACTAAATATTAAAAGAAATAAA
ACATACAAAGTTGCTGACTGTGATCTGGACACTTAAGAGGGTATCTGTCT
GGTATCAGATCTCCTTTCCTCCATATACACGACAGATGGTGCTTAGAAAT
GGGATTTACACATCATTTCCCATGGTTCGATCATTATTTCTGATGCTTTT
TCTCCTTAATATCTTTGAATTTGTCCCTTAACCCCTTTGTTGCTTGTCTT
TCCCTCTTGTGAAATGAGGACAGTAGATAAGCTGAGAGAATTCATCTGTT
AAAGTATTTGATACATGTAAAACACATGCCCCAGTAAGTGTCTATGTGAG
GAAGACACTACTTGAACTTTTTACATATAAATTCCATAATGGAGGTTCTT
GTTTGGCTTTTATATATTTCACATTCATCATGTGCAGGTCAGTCAAACTG
GTAATAATTCAACTCAGCCCTTGCCTTTGTACCAACATGTACAGTGACAC
CCTGGAGAATTCTGTCATTCTTCTTGCCTATGTGAAATGGGTACCATAAC
TCAGTTTTCTCCTTACTTTTTGTCTTCCTAATGGCAGTTAGTTCAACCAT
CTATATTGAGCAGTAGTTTGGAGGAGAACAGAATATTACCCAAGCAGCAC
ACTACTTGGTAACGCCTAAAAGAAGTGCTGACTCTCTCCTAGAGTAAATT
AATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_m24.b1 MSMg01no236_m24.b1 CHROMAT_FILE:
MSMg01no236_m24.b1 PHD_FILE: MSMg01no236_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:28 2005
         (686 letters)



>mm_chr1_176123909_176124994
          Length = 1086

 Score = 1065 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagagaagttagtgacccccagcaactttcacattcggaaactaaaaaggggcacggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 555 gaaagagaagttagtgacccccagcaactttcacattcggaaactaaaaaggggcagggc 496

                                                                       
Query: 61  aaagattctagcccaggtctgcactttaggcttgatgtgcttttaatctgtgttggaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaagattctagcccaggtctgcactttaggcttgatgtgcttttaatctgtgttggaaac 436

                                                                       
Query: 121 atgatttaaacaattcagtgactctgaacacattccaattcagaaagaagctagctcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgatttaaacaattcagtgactctgaacacattccaattcagaaagaagctagctcttc 376

                                                                       
Query: 181 attcatagaatagacttggtcccttcaatccataatgctacataaggtaatacgtctaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 attcatagaatagacttggtcccttcaatccataatgctacataaggtaatacgtctaca 316

                                                                       
Query: 241 taatccaaatgattaagttacttttaagcttatttaagctctaaaattttgaatgtacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 taatccaaatgattaagttacttttaagcttatttaagctctaaaattttgaatgtacca 256

                                                                       
Query: 301 tttgaatcatacagactcttaacaattacaaaggcatagaggagaacaaggtatggtgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tttgaatcatacagactcttaacaattacaaaggcatagaggagaacaaggtatggtgtt 196

                                                                       
Query: 361 ggcacacgcctttaattccagatactccaaagctgaggtagggtgattttgtgtttgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggcacacgcctttaattccagatactccaaagctgaggtagggtgattttgtgtttgagg 136

                                                                       
Query: 421 catggtaggagaacataatatgtatgtcttaaggtaagacaaattaaagaggcatgtaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 catggtaggagaacataatatgtatgtcttaaggtaagacaaattaaagaggcatgtaga 76

                                                                       
Query: 481 gaagcagaaggagtactagaaggacaaaaataatcaaataaaaaaagatctctgtctccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  gaagcagaaggagtactagaaggacaaaaataatcaaataaaaaaagatctctgtctccc 16

                          
Query: 541 cattctgtttaggac 555
           |||||||||||||||
Sbjct: 15  cattctgtttaggac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no236_m24.g1 MSMg01no236_m24.g1 CHROMAT_FILE:
MSMg01no236_m24.g1 PHD_FILE: MSMg01no236_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:28 2005
         (369 letters)



>mm_chr1_175969196_175969964
          Length = 769

 Score =  714 bits (369), Expect = 0.0
 Identities = 369/369 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtgtctatgtgaggaagacactacttgaactttttacatataaattccataatggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtgtctatgtgaggaagacactacttgaactttttacatataaattccataatggag 260

                                                                       
Query: 61  gttcttgtttggcttttatatatttcacattcatcatgtgcaggtcagtcaaactggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttgtttggcttttatatatttcacattcatcatgtgcaggtcagtcaaactggtaa 320

                                                                       
Query: 121 taattcaactcagcccttgcctttgtaccaacatgtacagtgacaccctggagaattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattcaactcagcccttgcctttgtaccaacatgtacagtgacaccctggagaattctg 380

                                                                       
Query: 181 tcattcttcttgcctatgtgaaatgggtaccataactcagttttctccttactttttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattcttcttgcctatgtgaaatgggtaccataactcagttttctccttactttttgtc 440

                                                                       
Query: 241 ttcctaatggcagttagttcaaccatctatattgagcagtagtttggaggagaacagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctaatggcagttagttcaaccatctatattgagcagtagtttggaggagaacagaat 500

                                                                       
Query: 301 attacccaagcagcacactacttggtaacgcctaaaagaagtgctgactctctcctagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attacccaagcagcacactacttggtaacgcctaaaagaagtgctgactctctcctagag 560

                    
Query: 361 taaattaat 369
           |||||||||
Sbjct: 561 taaattaat 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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