BAC Information

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BAC

Clone NameMSMg01-236O14
Chromosome1 (Build37)
Map Location 42,242,115 - 42,242,462
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041441, LOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236O14.T7 (MSMg01no236_o14.b1)MSMg01-236O14.TJ (MSMg01no236_o14.g1)
ACCAG402026AG402027
length732734
length of high quality
(start - end)		688 (45 - 732)349 (382 - 730)
definitionCHROMAT_FILE: MSMg01no236_o14.b1 PHD_FILE: MSMg01no236_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:35 2005CHROMAT_FILE: MSMg01no236_o14.g1 PHD_FILE: MSMg01no236_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGAAATTCCCAGGCAAATGGATTGAATTAGAAAATATCATCCTGA
GTGAGGTCACAAAAGAACACACATGGTATGTACTCATTGATAAGTGGATA
TTAGTCCAGAAGCTCAGAATACCCAAGATACAATATACAGACCACATGAA
GCTCAAGAGGAAGGAAGGCCAAAGTGTGGATACTTCGTTCCTTCTTAGAA
TGGGGAACAAAATACCCATGGGAGAAGATACAGAGACAAAGTGTAGAGCA
GAGACTGAAGGAATGACCATCCAGAGACCTGGTTATCCATCACATATACA
ATCACCAAACCCAGACACTAGTGTGGATGCCAACAAGTACTTGCTGATAG
GAGCCTGATATAACTGTCTTCTAAGAGGCTTTGTCAGTGCCTGACAAATA
CAGAGGTGGATGTTCACAGCCAACCATTGGACTGAGCACAGCGTCCCCAA
TGGAGGAGCTAGAGAAAGGACCAAAGGAGTTGAAGGGGTTTGCAGGCCCA
AAATGAGGAACAACAGTATGAACCAACCAGTACCCCCAGAGCTCCCTGGG
ACTAAACCACCAACCAAAGAGTATATATGGAGGGACCCATGATTCTAGCC
ACATATATAGCAGAGGATGGCCTTGGCAGACATCTAGGGGAGGAGAGGCT
CTTGGTACTGTGAAATCACTATACGCCAGTGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAATTAACCTATGGAAAAAAA
CATTGTAAAGAATGAGAGATGTGGGAACTATTGAGATGCTTCAAACAGCT
TGCTATTAAACTTAAGTATAAGGAATATTTGTCATGTGTGTAATTCAGTG
TTATAGGCATCATATTCAATAGTTTTAAATACTGGCAACTGTGCTTTTCC
ATTTAGTTATTCCATACTTATCAGGAATCAGTACTGACAAGTTACATGTA
GAATTATTTTTGCTGGCACATGGATTAAGACAGAATAATAAATAAGCTAA
ATATTTATCATTATAATTATCCACCCCCCCGCCATTATATTAGTGACATT
AGTTATTGAAAAGCAATGAAATTAATCTACATGAAATGTTCTTTAAATTC
TCTATAAGAGAATGAATAACTGGTGTTCTCGTCTCACTTTCTCGTGGTCT
CTTTGGAGATGTTCATAAATGTTTCCTGATTTTTCCAAAGAAGGTGATTT
TCCTCTGAAGCCCTACAACACATCTTGTCTATAAAACATTTCTGAAATCT
CACAAGGGCTGTGAGGTTTGTACTTATTGATATTGCTGTCTTTATCTGCC
CATATCCCCCACTGGAACCAGAGCTTCTCANATCCTGTAGCATGGCCTCT
GCATTTTGCACTCTTTATAAAGTACTTTACAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_o14.g1 MSMg01no236_o14.g1 CHROMAT_FILE:
MSMg01no236_o14.g1 PHD_FILE: MSMg01no236_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:35 2005
         (349 letters)



>mm_chr1_42241914_42242662
          Length = 749

 Score =  652 bits (337), Expect = 0.0
 Identities = 345/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   cattatattagtgacattagttattgaaaagcaatgaaattaatctacatgaaatgttct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cattatattagtgacattagttattgaaaagcaatgaaattaatctacatgaaatgttct 261

                                                                       
Query: 62  ttaaattctctataagagaatgaataactggtgttctcgtctcactttctcgtggtctct 121
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 ttaaattctctataagagaatgaataactggtgttctcgtctcactttcttgtggtctct 321

                                                                       
Query: 122 ttggagatgttcataaatgtttcctgatttttccaaagaaggtgattttcctctgaagcc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttggagatgttcataaatgtttcctgatttttccaaagaaggtgattttcctctgaagcc 381

                                                                       
Query: 182 ctacaacacatcttgtctataaaacatttctgaaatctcacaagggctgtgaggtttgta 241
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctacaacacgtcttgtctataaaacatttctgaaatctcacaagggctgtgaggtttgta 441

                                                                       
Query: 242 cttattgatattgctgtctttatctgcccatatcccccactggaaccagagcttctcana 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 442 cttattgatattgctgtctttatctgcccatatcccccactggaaccagagcttctcaaa 501

                                                           
Query: 302 tcctgtagcatggcctctgcattttgcactctttataaagtactttac 349
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcctgtagcatggcctctgcattttgcactctttataaagtactttac 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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